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[189681_at]

Description F45E10.2 /REP_DB=WormBase Gene ID /WP=CE24978 /TR=Q9N641 /GB=CAB76735.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_high_8_8 > 06      6grp_highest_nonorm > 94      6grp_total > 75      4grp_total > 02      6grp_highest_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3956
1 2 3 4 range
A 320.9
(-2.7)
P 		151.7
(-3)
A 		150.9
(-3)
A 		3573
(3)
P 		3422
B 303.7
(-2.7)
P 		140.5
(-3)
P 		176.3
(-2.9)
A 		3746
(3)
P 		3606
C 305.6
(-2.8)
P 		176.3
(-3)
A 		181.9
(-3)
P 		4096
(3)
P 		3920
avr 310.1
(-2.7) 		156.2
(-3) 		169.7
(-3) 		3805
(3) 		3649

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 739
1 2 3 4 5 6 range
A 320.8
(-3)
P 		485.3
(-1.6)
P 		520
(-1.3)
P 		701.8
(0.3)
P 		489.7
(-1.5)
P 		1013
(3)
P 		692
B 363.6
(-3)
P 		461.3
(-2.2)
P 		512.9
(-1.7)
P 		634.4
(-0.7)
P 		493.5
(-1.9)
P 		1059.7
(3)
P 		696
C 325.9
(-3)
P 		491.4
(-0.8)
P 		656.3
(1.4)
P 		613.7
(0.8)
P 		501.2
(-0.7)
P 		777.5
(3)
P 		452
avr 336.8
(-3) 		479.3
(-1.6) 		563.1
(-0.8) 		650
(0.1) 		494.8
(-1.5) 		950.1
(3) 		613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 765
1 2 3 4 range
A 116.9
(-2)
P 		32.9
(-3)
A 		39.4
(-2.9)
A 		523
(3)
P 		490
B 96.9
(-2.5)
P 		34.7
(-3)
P 		40.8
(-3)
A 		798.3
(3)
P 		764
C 101.2
(-2.5)
P 		50.7
(-3)
A 		63.4
(-2.9)
P 		690.7
(3)
P 		640
avr 105
(-2.4) 		39.4
(-3) 		47.9
(-2.9) 		670.7
(3) 		631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 59.1
(-3)
P 		172.6
(0.6)
P 		113.2
(-1.3)
P 		178
(0.8)
P 		147.8
(-0.2)
P 		246.6
(3)
P 		188
B 126.5
(-3)
P 		153.5
(-2.4)
P 		124.6
(-3)
P 		168
(-2)
P 		200.5
(-1.3)
P 		395.1
(3)
P 		271
C 120.8
(-3)
P 		149.9
(-1.7)
P 		167
(-1)
P 		123.4
(-2.9)
P 		162.2
(-1.2)
P 		260.3
(3)
P 		140
avr 102.1
(-3) 		158.7
(-1.3) 		134.9
(-2) 		156.5
(-1.4) 		170.2
(-0.9) 		300.7
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2789
Sequence Type Exemplar sequence
Representative Public ID F45E10.2 NCBI
Target Description F45E10.2 /REP_DB=WormBase Gene ID /WP=CE24978 /TR=Q9N641 /GB=CAB76735.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027002(11), NM_001027003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027002 NCBI Caenorhabditis elegans F45E10.2a (F45E10.2) mRNA, complete cds. 11/11 None
NM_001027003 NCBI Caenorhabditis elegans F45E10.2b (F45E10.2) mRNA, complete cds. 11/11 None
F45E10.2a ENSEMBL cdna:known chromosome:CEL140:II:11052053:11054457:-1 gene:F45E10.2 11/11 None
F45E10.2b ENSEMBL cdna:known chromosome:CEL140:II:11052321:11055171:-1 gene:F45E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11052317-11054454(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45E10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76718 Hypothetical protein F45E10.2a [Caenorhabditis elegans] emb|CAB76735.1| Hypothetical protein F45E10.2a [Caenorhabditis elegans] ref|NP_001022173.1| F45E10.2a [Caenorhabditis elegans] 0.0
blast CAH10843 Hypothetical protein F45E10.2b [Caenorhabditis elegans] emb|CAH04705.1| Hypothetical protein F45E10.2b [Caenorhabditis elegans] ref|NP_001022174.1| F45E10.2b [Caenorhabditis elegans] 0.0
blast CAE59577 Hypothetical protein CBG02977 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 4.9E-33
Pfam IPR005828 EMBL-EBI General substrate transporter 4.9E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022173.1 11 50-72,142-164,174-193,200-222,227-246,316-333,343-365,372-391,401-423,435-457,462-484
NP_001022174.1 11 85-107,176-198,208-227,234-256,261-280,350-367,377-399,406-425,435-457,469-491,496-518
F45E10.2a 11 50-72,142-164,174-193,200-222,227-246,316-333,343-365,372-391,401-423,435-457,462-484
F45E10.2b 11 85-107,176-198,208-227,234-256,261-280,350-367,377-399,406-425,435-457,469-491,496-518
Sequence
Target Sequence 
>C. ELEGANS:189681_AT
cgttggcggaggcagtttgttcgtcacatttgtcacttctcaactcatggagcttcctgc
tgtcatcatcgttgcattgctaattgacagacttggaagacgtatcatgtattctggagc
tatcttcactgctggaatgcttcttctggctagttggcttacacatgacttgattccgag
tcaatatgcagttattatgctgatggttgcaaagggagctgtgtcagttgcatatactgt
catgtacacctacacatctgaacttttcccaacagttattcgcaatactgcagttggatg
ttgctcgacaatagctagatttggagcaatcagtgcttctttcattgcattctttttggt
tgatagattcggccgaatcgtcatgattatcccattcacaatactcgctttatgtgcatc
aattgtctcatggacaatgttacccgagaccgtaaaccaacaacttcctgactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGGCGGAGGCAGTTTGTTCGTC 38 187 1023 Antisense
TTCGTCACATTTGTCACTTCTCAAC 371 695 1042 Antisense
TTCCTGCTGTCATCATCGTTGCATT 224 699 1076 Antisense
GGAGCTATCTTCACTGCTGGAATGC 198 521 1138 Antisense
AATGCTTCTTCTGGCTAGTTGGCTT 36 167 1158 Antisense
GGCTTACACATGACTTGATTCCGAG 11 537 1178 Antisense
ACACCTACACATCTGAACTTTTCCC 73 109 1268 Antisense
ATCAGTGCTTCTTTCATTGCATTCT 405 29 1351 Antisense
TGATTATCCCATTCACAATACTCGC 182 565 1406 Antisense
CATGGACAATGTTACCCGAGACCGT 75 209 1451 Antisense
CGTAAACCAACAACTTCCTGACTCG 242 245 1473 Antisense
Sequence Source Affymetrix Proprietary Database