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[189680_at]

Description F15B9.3 /REP_DB=WormBase Gene ID /WP=CE09408 /TR=Q19480 /GB=CAB01423.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=LAG-2 protein like
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 22      6grp_total > 70      4grp_total > 17      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 574
1 2 3 4 range
A 115.3
(-3)
P 		185.1
(-2.2)
M 		178.2
(-2.3)
P 		652.5
(3)
P 		537
B 79
(-3)
P 		208.6
(-0.8)
P 		223.7
(-0.5)
P 		427.7
(3)
P 		349
C 103.7
(-3)
P 		226.8
(-1.4)
P 		200.8
(-1.7)
M 		559.5
(3)
P 		456
avr 99.3
(-3) 		206.8
(-1.6) 		200.9
(-1.6) 		546.6
(3) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 152.4
(-0.9)
M 		79.2
(-3)
A 		226
(1.3)
P 		286.4
(3)
M 		160.2
(-0.7)
P 		197.6
(0.4)
M 		207
B 223.1
(1.1)
P 		207.1
(-0.6)
P 		218.9
(0.7)
P 		239.8
(3)
P 		185.7
(-3)
P 		198
(-1.6)
P 		54
C 209.3
(1.7)
P 		196.6
(0.8)
P 		138.9
(-3)
A 		149.5
(-2.3)
P 		229.7
(3)
M 		170.6
(-0.9)
P 		91
avr 194.9
(0.2) 		161
(-3) 		194.6
(0.1) 		225.2
(3) 		191.9
(-0.1) 		188.7
(-0.4) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 42
(-2.8)
P 		40.2
(-3)
M 		46.6
(-2.3)
P 		95.5
(3)
P 		55
B 25.2
(-3)
P 		51.5
(-0.6)
P 		51.8
(-0.6)
P 		91.1
(3)
P 		66
C 34.3
(-3)
P 		65.2
(0.1)
P 		70
(0.6)
M 		94.3
(3)
P 		60
avr 33.8
(-3) 		52.3
(-1.1) 		56.1
(-0.8) 		93.6
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 28.1
(-3)
M 		28.2
(-3)
A 		49.2
(-0.2)
P 		72.6
(3)
M 		48.3
(-0.3)
P 		48.1
(-0.3)
M 		45
B 77.6
(3)
P 		68.9
(0.9)
P 		53.2
(-3)
P 		63.5
(-0.5)
P 		75.5
(2.5)
P 		73.8
(2.1)
P 		24
C 77.6
(3)
P 		60
(0.8)
P 		35.4
(-2.3)
A 		30.1
(-3)
P 		74.3
(2.6)
M 		57.1
(0.4)
P 		48
avr 61.1
(1.5) 		52.4
(-1.1) 		45.9
(-3) 		55.4
(-0.2) 		66
(3) 		59.7
(1.1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14514
Sequence Type Exemplar sequence
Representative Public ID F15B9.3 NCBI
Target Description F15B9.3 /REP_DB=WormBase Gene ID /WP=CE09408 /TR=Q19480 /GB=CAB01423.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=LAG-2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073849
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073849 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-5) (far-5) mRNA, complete cds. None
SNAP00000032630 ENSEMBL cdna:SNAP chromosome:CEL140:V:12998214:12999357:1 None
GENEFINDER00000032645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12998214:12999357:1 None
F15B9.3 ENSEMBL cdna:known chromosome:CEL140:V:12998192:12999368:1 gene:F15B9.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12996216-12998624(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol far-5
Ensembl F15B9.3
Entrez Gene 184522 Entrez gene
SwissProt Q19480 EMBL-EBI
WormBase CE33997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01423 Hypothetical protein F15B9.3 [Caenorhabditis elegans] ref|NP_506250.2| Fatty Acid/Retinol binding protein family member (far-5) [Caenorhabditis elegans] 4.0E-92
blast CAE64699 Hypothetical protein CBG09482 [Caenorhabditis briggsae] 4.0E-79
blast CAB01422 Hypothetical protein F15B9.1 [Caenorhabditis elegans] ref|NP_506251.1| Fatty Acid/Retinol binding protein family member (far-3) [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 1.7E-19
Sequence
Target Sequence 
>C. ELEGANS:189680_AT
gttcgtgagtggatatttcggtcaagtagaaccgcatacagttgctcgggagcttgtcaa
acacgaaaaaggtgttgcgacttggctttgtccaccttcttcaaattattgattcgtctg
gtcagtatcaagatgttactccgtttctttgctattttattaatttttcatttctcattt
gctgctgatggaatatttgaagctgttattgagagctataaagatgctcttccaccaaaa
gttgttgcggcttttgataatttgagtccaggggaaagtgctattatgaaagaagtattc
atgaattatgataaatttacaagtattgctgatctgattgttgcaatcaagaagaaatcg
gaatcacttggatcgtttttcgagaaactttacattgaaattgacgctgaaattcaggca
ttaacaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGTGAGTGGATATTTCGGTCAA 366 441 1102 Antisense
GTAGAACCGCATACAGTTGCTCGGG 128 455 1127 Antisense
GTTGCTCGGGAGCTTGTCAAACACG 297 439 1142 Antisense
AAAGGTGTTGCGACTTGGCTTTGTC 566 121 1169 Antisense
TTGTCCACCTTCTTCAAATTATTGA 125 709 1189 Antisense
GTATCAAGATGTTACTCCGTTTCTT 58 455 1226 Antisense
TACTCCGTTTCTTTGCTATTTTATT 666 645 1238 Antisense
AAGATGCTCTTCCACCAAAAGTTGT 122 155 1322 Antisense
GTTGTTGCGGCTTTTGATAATTTGA 465 437 1342 Antisense
GGAATCACTTGGATCGTTTTTCGAG 416 533 1461 Antisense
GCTGAAATTCAGGCATTAACACCGG 42 297 1507 Antisense
Sequence Source Affymetrix Proprietary Database