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[189676_s_at] glycosyl hyrolase

Description T01C4.1 /REP_DB=WormBase Gene ID /WP=CE12928 /TR=Q94298 /GB=AAB09177.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glycosyl hyrolase
Cluster 6grp_total > 15      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 122.9
(3)
P 		43.7
(-1.8)
A 		25.1
(-3)
A 		24.9
(-3)
A 		98
B 106.4
(3)
P 		56.5
(-0.3)
A 		14.4
(-3)
A 		22.8
(-2.5)
A 		92
C 98.6
(3)
P 		30.2
(-2.4)
A 		22.5
(-3)
P 		26.6
(-2.7)
A 		76
avr 109.3
(3) 		43.5
(-1.5) 		20.7
(-3) 		24.8
(-2.7) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 65.9
(3)
A 		27
(-0.9)
A 		6
(-3)
A 		9.2
(-2.7)
A 		16.4
(-2)
A 		16.2
(-2)
A 		60
B 31.3
(1.3)
P 		36.2
(2)
P 		42.6
(3)
A 		16.8
(-0.9)
A 		4.3
(-2.8)
A 		2.9
(-3)
A 		40
C 27.4
(0.4)
A 		46.7
(3)
P 		5.2
(-2.6)
A 		15.6
(-1.2)
A 		9.7
(-2)
A 		2.1
(-3)
A 		45
avr 41.5
(3) 		36.6
(2.1) 		17.9
(-1.1) 		13.9
(-1.8) 		10.1
(-2.5) 		7.1
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 44.7
(3)
P 		9.5
(-2.1)
A 		6.6
(-2.6)
A 		3.6
(-3)
A 		41
B 33.9
(3)
P 		14
(-0.9)
A 		3.3
(-3)
A 		4.9
(-2.7)
A 		31
C 32.6
(3)
P 		8.7
(-2.1)
A 		7.8
(-2.3)
P 		4.5
(-3)
A 		28
avr 37.1
(3) 		10.7
(-1.8) 		5.9
(-2.7) 		4.3
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.2
(3)
A 		9.6
(1.6)
A 		1.3
(-3)
A 		2.3
(-2.4)
A 		4.9
(-1)
A 		3.9
(-1.6)
A 		11
B 10.9
(2.3)
P 		12.1
(3)
P 		10.3
(2)
A 		4.4
(-1.2)
A 		1.7
(-2.7)
A 		1.1
(-3)
A 		11
C 10.2
(1.2)
A 		14.2
(3)
P 		1.3
(-2.7)
A 		3.1
(-1.9)
A 		3.1
(-1.9)
A 		0.7
(-3)
A 		14
avr 11.1
(2.5) 		12
(3) 		4.3
(-1.6) 		3.3
(-2.2) 		3.2
(-2.2) 		1.9
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189676_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12087
Sequence Type Exemplar sequence
Representative Public ID T01C4.1 NCBI
Target Description T01C4.1 /REP_DB=WormBase Gene ID /WP=CE12928 /TR=Q94298 /GB=AAB09177.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glycosyl hyrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072405 NCBI Caenorhabditis elegans T01C4.1 (T01C4.1) mRNA, complete cds. 11/11 A 
SNAP00000016305 ENSEMBL cdna:SNAP chromosome:CEL140:V:7126485:7131482:1 11/11 None
SNAP00000016306 ENSEMBL cdna:SNAP chromosome:CEL140:V:7131738:7132116:-1 10/11 None
GENEFINDER00000016309 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7126485:7131482:1 11/11 None
GENEFINDER00000016310 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7131738:7132152:-1 11/11 None
T01C4.1 ENSEMBL cdna:known chromosome:CEL140:V:7126250:7131482:1 gene:T01C4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7126250-7131483(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyl hyrolase
Ensembl T01C4.1
Entrez Gene 187942 Entrez gene
SwissProt Q94298 EMBL-EBI
WormBase CE12928 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504806 T01C4.1 [Caenorhabditis elegans] gb|AAB09177.1| Hypothetical protein T01C4.1 [Caenorhabditis elegans] 0.0
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 0.0
blast CAE57776 Hypothetical protein CBG00798 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 2.2E-8
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 0.017
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.5E-10
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 0.019
Pfam IPR010264 EMBL-EBI Plant self-incompatibility S1 4.2E-8
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-126
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 6.0E-8
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.5E-10
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 0.019
Pfam IPR010264 EMBL-EBI Plant self-incompatibility S1 4.2E-8
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-126
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.0E-7
Sequence
Target Sequence 
>C. ELEGANS:189676_S_AT
gcctcatgatctgggcactggatcttgacgacgacgctgacactcttctgaatttggtat
cttctgccgggttatgctctggagggagtggtgataaaataacatataaatgtgttccga
ttgatgacgtcagatggtggactcctgagaattcagacgaaaacaggcaaggacaatgtg
gaaaatcagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCATGATCTGGGCACTGGATCT 207 281 3902 Antisense
GATCTGGGCACTGGATCTTGACGAC 705 417 3909 Antisense
TGGATCTTGACGACGACGCTGACAC 521 545 3920 Antisense
ACGCTGACACTCTTCTGAATTTGGT 253 91 3935 Antisense
GACACTCTTCTGAATTTGGTATCTT 441 367 3940 Antisense
TCTGAATTTGGTATCTTCTGCCGGG 196 609 3948 Antisense
TCTGCCGGGTTATGCTCTGGAGGGA 469 607 3964 Antisense
GTTATGCTCTGGAGGGAGTGGTGAT 464 445 3972 Antisense
GATGACGTCAGATGGTGGACTCCTG 229 411 4024 Antisense
GGTGGACTCCTGAGAATTCAGACGA 393 499 4037 Antisense
AGGACAATGTGGAAAATCAGCTCCA 570 55 4071 Antisense
Sequence Source Affymetrix Proprietary Database