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[189673_at]

Description F14F11.1 /REP_DB=WormBase Gene ID /WP=CE03209 /TR=Q19464 /GB=CAA91092.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=potassium channel
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 154.1
(1.2)
P 		142.4
(0.4)
P 		96.7
(-3)
P 		177.9
(3)
P 		81
B 169.7
(3)
P 		95.8
(-3)
P 		122.8
(-0.8)
P 		142.7
(0.8)
P 		74
C 144.7
(-1.4)
P 		164.7
(1.2)
P 		132.1
(-3)
P 		178.5
(3)
P 		46
avr 156.2
(1.8) 		134.3
(-0.9) 		117.2
(-3) 		166.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 127.9
(1.3)
P 		147.8
(2.7)
P 		108.6
(-0.1)
P 		152.2
(3)
P 		142.6
(2.3)
P 		67.4
(-3)
P 		85
B 151.6
(1.4)
P 		179.5
(3)
P 		77.5
(-3)
P 		123.6
(-0.3)
P 		103.2
(-1.5)
P 		98.9
(-1.7)
P 		102
C 193.1
(3)
P 		154.3
(-0.2)
P 		146.7
(-0.8)
P 		154.4
(-0.2)
P 		129
(-2.3)
P 		120.4
(-3)
P 		73
avr 157.5
(2.7) 		160.5
(3) 		110.9
(-1.6) 		143.4
(1.4) 		124.9
(-0.3) 		95.6
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 56.1
(3)
P 		30.9
(-1.9)
P 		25.3
(-3)
P 		26
(-2.9)
P 		31
B 54.1
(3)
P 		23.7
(-3)
P 		28.5
(-2.1)
P 		30.4
(-1.7)
P 		30
C 47.9
(3)
P 		47.4
(2.8)
P 		46
(2.4)
P 		30.1
(-3)
P 		18
avr 52.7
(3) 		34
(-1.7) 		33.3
(-1.9) 		28.8
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 23.6
(-1.8)
P 		52.6
(3)
P 		23.6
(-1.8)
P 		38.6
(0.7)
P 		43
(1.4)
P 		16.4
(-3)
P 		36
B 52.7
(2)
P 		59.8
(3)
P 		18.8
(-3)
P 		32.7
(-1)
P 		41.9
(0.4)
P 		36.9
(-0.4)
P 		41
C 71.6
(3)
P 		47.1
(-0.6)
P 		37.3
(-2.1)
P 		31.1
(-3)
P 		41.7
(-1.4)
P 		40.3
(-1.6)
P 		41
avr 49.3
(2.1) 		53.2
(3) 		26.6
(-3) 		34.1
(-1.3) 		42.2
(0.5) 		31.2
(-2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2620
Sequence Type Exemplar sequence
Representative Public ID F14F11.1 NCBI
Target Description F14F11.1 /REP_DB=WormBase Gene ID /WP=CE03209 /TR=Q19464 /GB=CAA91092.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=potassium channel
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026918(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026918 NCBI Caenorhabditis elegans F14F11.1h (F14F11.1) mRNA, complete cds. 9/11 None
SNAP00000016421 ENSEMBL cdna:SNAP chromosome:CEL140:II:8305806:8307030:-1 11/11 None
GENEFINDER00000016423 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8305811:8310527:-1 9/11 None
F14F11.1h ENSEMBL cdna:known chromosome:CEL140:II:8305694:8321394:-1 gene:F14F11.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174331 8 1 NM_001026918 189673_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8305802-8310518(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14F11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE48494 Hypothetical protein F14F11.1h [Caenorhabditis elegans] emb|CAE48498.1| Hypothetical protein F14F11.1h [Caenorhabditis elegans] ref|NP_001022089.1| F14F11.1h [Caenorhabditis elegans] 0.0
blast CAD56556 Hypothetical protein F14F11.1b [Caenorhabditis elegans] emb|CAD56576.1| Hypothetical protein F14F11.1b [Caenorhabditis elegans] ref|NP_871937.1| F14F11.1b [Caenorhabditis elegans] 0.0
blast CAD56557 Hypothetical protein F14F11.1c [Caenorhabditis elegans] emb|CAD56577.1| Hypothetical protein F14F11.1c [Caenorhabditis elegans] ref|NP_871938.1| F14F11.1c [Caenorhabditis elegans] 0.0
blast CAE57687 Hypothetical protein CBG00686 [Caenorhabditis briggsae] 0.0
blast CAD56575 Hypothetical protein F14F11.1g [Caenorhabditis elegans] ref|NP_871942.1| F14F11.1g [Caenorhabditis elegans] 0.0
blast CAD56573 Hypothetical protein F14F11.1e [Caenorhabditis elegans] ref|NP_871940.1| F14F11.1e [Caenorhabditis elegans] 0.0
blast CAE48494 Hypothetical protein F14F11.1h [Caenorhabditis elegans] emb|CAE48498.1| Hypothetical protein F14F11.1h [Caenorhabditis elegans] ref|NP_001022089.1| F14F11.1h [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR005821 EMBL-EBI Ion transport protein 1.8E-15
Pfam IPR005821 EMBL-EBI Ion transport protein 6.1E-36
Pfam IPR005821 EMBL-EBI Ion transport protein 3.2E-39
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.8E-46
Pfam IPR005821 EMBL-EBI Ion transport protein 3.2E-39
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.8E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022089.1 4 263-282,426-448,463-482,489-511
F14F11.1h 4 263-282,426-448,463-482,489-511
SNAP00000016421 2 79-101,129-151
GENEFINDER00000016423 8 288-310,333-355,365-384,396-418,463-485,627-649,664-683,690-712
Sequence
Target Sequence 
>C. ELEGANS:189673_AT
tcaacattccactggcctcaagattttaattcaaacattcaaagcatctgctcaggaatt
atttctcttagttttctttgttcttcttggtattgtgatatttgctgcactggtttatta
tgctgaaagagttgaacataacgaagaaaatcaattctcgtcgattccggttcctcaaac
atcacttggccgtttagttggctctgtgtgtgctctaatgggggtgctcacaattgctct
tccggttccagttatcgtatccaactttgcaatgttttactcacatgcacaagcacgatc
taaacttccaaagaaaagacgaagagttcttcaaccacacgaaattaagccagttgttgg
aagaagtacaactgcagttatgataagtgctctcacacaaagaggtccagttagtggtgg
aggttcaaatccttcagatggaggccctctctctgcgttttctaacaacactccacttct
cgtgtgcccacctgacggatccacaaaacctaaaaaactcagtcaaaacaagaatggagg
gaccacaccgattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACATTCCACTGGCCTCAAGATT 654 629 1755 Antisense
GTTTTCTTTGTTCTTCTTGGTATTG 231 449 1825 Antisense
AATCAATTCTCGTCGATTCCGGTTC 494 171 1903 Antisense
CGGTTCCTCAAACATCACTTGGCCG 696 239 1922 Antisense
CACTTGGCCGTTTAGTTGGCTCTGT 236 197 1937 Antisense
TTGGCTCTGTGTGTGCTCTAATGGG 94 709 1952 Antisense
AATGGGGGTGCTCACAATTGCTCTT 76 159 1971 Antisense
GAAGAGTTCTTCAACCACACGAAAT 71 339 2075 Antisense
CAAATCCTTCAGATGGAGGCCCTCT 290 191 2180 Antisense
CTCTCTCTGCGTTTTCTAACAACAC 108 231 2201 Antisense
GAATGGAGGGACCACACCGATTCAA 703 329 2286 Antisense
Sequence Source Affymetrix Proprietary Database