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[189671_at] cytochrome P450

Description C50H11.15 /REP_DB=WormBase Gene ID /WP=CE08931 /TR=O16482 /GB=AAG24002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 81      6grp_total > 50      4grp_total > 61      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 317
(3)
P 		273.4
(1.7)
P 		227.7
(0.2)
P 		122.8
(-3)
P 		194
B 293.1
(1.6)
P 		290.8
(1.6)
P 		350.4
(3)
P 		102.6
(-3)
P 		248
C 317.6
(3)
P 		253.1
(1.2)
P 		207.7
(-0)
P 		100.5
(-3)
P 		217
avr 309.2
(3) 		272.4
(1.9) 		261.9
(1.6) 		108.6
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 371.5
(3)
P 		259.1
(-1.3)
P 		250.1
(-1.7)
P 		288.4
(-0.2)
P 		219.9
(-2.8)
P 		215.2
(-3)
P 		156
B 293.5
(1.4)
P 		216.7
(-1.2)
P 		282
(1)
P 		343
(3)
P 		209.2
(-1.4)
P 		162.4
(-3)
P 		181
C 261.8
(-0.3)
P 		202.9
(-1.9)
P 		310.9
(1.1)
P 		379
(3)
P 		244.2
(-0.8)
P 		165
(-3)
P 		214
avr 308.9
(1.9) 		226.2
(-1.3) 		281
(0.9) 		336.8
(3) 		224.4
(-1.3) 		180.9
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 115.4
(3)
P 		59.4
(-0.4)
P 		59.5
(-0.4)
P 		18
(-3)
P 		97
B 93.5
(3)
P 		71.8
(1.2)
P 		81.2
(2)
P 		21.9
(-3)
P 		72
C 105.1
(3)
P 		72.8
(0.8)
P 		72.4
(0.8)
P 		16.9
(-3)
P 		88
avr 104.7
(3) 		68
(0.4) 		71
(0.6) 		18.9
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 68.5
(-0.6)
P 		92.2
(3)
P 		54.5
(-2.7)
P 		73.1
(0.1)
P 		66.4
(-0.9)
P 		52.4
(-3)
P 		40
B 102.1
(3)
P 		72.1
(-1.3)
P 		68.5
(-1.9)
P 		90.8
(1.4)
P 		85
(0.5)
P 		60.6
(-3)
P 		42
C 97
(3)
P 		61.9
(-2)
P 		79.1
(0.4)
P 		76.2
(0)
P 		79
(0.4)
P 		55.2
(-3)
P 		42
avr 89.2
(3) 		75.4
(0.5) 		67.4
(-1) 		80
(1.3) 		76.8
(0.8) 		56.1
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15028
Sequence Type Exemplar sequence
Representative Public ID C50H11.15 NCBI
Target Description C50H11.15 /REP_DB=WormBase Gene ID /WP=CE08931 /TR=O16482 /GB=AAG24002.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071445 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C9) (cyp-33C9) mRNA, complete cds. 11/11 None
SNAP00000043570 ENSEMBL cdna:SNAP chromosome:CEL140:V:3091686:3095423:-1 11/11 None
C50H11.15 ENSEMBL cdna:known chromosome:CEL140:V:3091673:3094328:-1 gene:C50H11.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3091685-3094310(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-33C9
Ensembl C50H11.15
Entrez Gene 178752 Entrez gene
SwissProt O16482 EMBL-EBI
WormBase CE08931 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261986_S_AT cytochrome P450, putative at
HG-U95AV2:1552_I_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HC-G110:1552_I_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U95AV2:1553_R_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HC-G110:1553_R_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133_PLUS_2:208327_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133A:208327_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-FOCUS:208327_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133A_2:208327_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U95AV2:1554_F_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HC-G110:1554_F_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133_PLUS_2:207718_X_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133A:207718_X_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-FOCUS:207718_X_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U133A_2:207718_X_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HG-U95AV2:1338_S_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HC-G110:1338_S_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HUGENEFL:U22028_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
HUGENEFL:U22028_R_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
U133_X3P:G6470138_3P_S_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
U133_X3P:G13699808_3P_X_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
U133_X3P:G13699808_3P_S_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
U133_X3P:G13699808_3P_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
U133_X3P:208327_3P_AT cytochrome P450, family 2, subfamily A, polypeptide 13 hs
MOUSE430_2:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 4 mm
MOE430A:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 4 mm
MOUSE430A_2:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 4 mm
MU11KSUBA:J03549_S_AT cytochrome P450, family 2, subfamily a, polypeptide 4 mm
MG-U74AV2:102847_S_AT cytochrome P450, family 2, subfamily a, polypeptide 4 mm
MOUSE430_2:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 5 mm
MOE430A:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 5 mm
MOUSE430A_2:1422230_S_AT cytochrome P450, family 2, subfamily a, polypeptide 5 mm
MU11KSUBA:J03549_S_AT cytochrome P450, family 2, subfamily a, polypeptide 5 mm
MG-U74AV2:102847_S_AT cytochrome P450, family 2, subfamily a, polypeptide 5 mm
RT-U34:J02852_G_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
RG-U34A:J02852_G_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
RT-U34:J02852_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
RG-U34A:J02852_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
RAE230A:1369136_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
RAT230_2:1369136_AT Cytochrome P450, subfamily IIA (phenobarbital-inducble)/ (Cytochrome P450 IIA3) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503846 CYtochrome P450 family member (cyp-33C9) [Caenorhabditis elegans] gb|AAG24002.1| Cytochrome p450 family protein 33C9 [Caenorhabditis elegans] 0.0
blast CAE71568 Hypothetical protein CBG18519 [Caenorhabditis briggsae] 0.0
blast CAE58152 Hypothetical protein CBG01242 [Caenorhabditis briggsae] 1.0E-162
blast CAE58152 Hypothetical protein CBG01242 [Caenorhabditis briggsae] 1.0E-157
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-156
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 8.5E-116
Pfam IPR001128 EMBL-EBI Cytochrome P450 7.2E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503846.1 1 2-20
C50H11.15 1 2-20
SNAP00000043570 2 15-37,64-86
Sequence
Target Sequence 
>C. ELEGANS:189671_AT
aacagctgtccaacatgtgtctcgatctctggtttgctgctctgatgaccacctcaaata
cgatgacatggtgctttgcctacaccctaaactacctggatgctcaacaaaaactccatg
aagaactcgatcgagtgatcggaagcgagcgacacatcaacactgctgacaagcctaatc
taccgtacaccaacgcgtacatcaacgagatccagcgaaccgccaacttggtacccttga
atcttcttcacatgacgaccagggatactgtactgaaggggtacaatattccaaagggta
ctggagtggtggcacagataagtacagttatgtatgatgagaatgtcttccctgagccgt
atattttcaagccggagagattccttgatgacgatggaaaactgaaaaaggtcgagcaac
tggtcccattttcagttggaaaacggcagtgcctcggagaagggcttgctcgtatggagc
tcttcctttttattgccaactttttcaatagatacagggttgttccggatgcaaacgggc
ctccaattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCTGTCCAACATGTGTCTCGA 231 137 878 Antisense
TCTCTGGTTTGCTGCTCTGATGACC 378 611 903 Antisense
ACGATGACATGGTGCTTTGCCTACA 694 93 937 Antisense
TACACCCTAAACTACCTGGATGCTC 491 641 958 Antisense
GAAGCGAGCGACACATCAACACTGC 259 343 1019 Antisense
CTGACAAGCCTAATCTACCGTACAC 160 239 1043 Antisense
CAACTTGGTACCCTTGAATCTTCTT 553 187 1101 Antisense
GAATCTTCTTCACATGACGACCAGG 396 327 1116 Antisense
AAAAAGGTCGAGCAACTGGTCCCAT 32 3 1282 Antisense
AGGGCTTGCTCGTATGGAGCTCTTC 607 57 1338 Antisense
GGATGCAAACGGGCCTCCAATTATT 17 511 1404 Antisense
Sequence Source Affymetrix Proprietary Database