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[189670_at] zinc finger protein

Description ZK6.2 /REP_DB=WormBase Gene ID /WP=CE18439 /TR=O61872 /GB=AAG45572.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 42      4grp_total > 63      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 24.6
(3)
A 		5.7
(-3)
A 		10.1
(-1.6)
A 		6.9
(-2.6)
A 		19
B 12.7
(-1.6)
A 		6
(-2.9)
A 		36.4
(3)
A 		5.4
(-3)
A 		31
C 8
(-1.7)
A 		5.9
(-2.4)
A 		4.4
(-3)
A 		20.6
(3)
A 		16
avr 15.1
(2) 		5.9
(-3) 		17
(3) 		11
(-0.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 10.6
(3)
A 		4.3
(-3)
A 		9.9
(2.3)
A 		9
(1.5)
A 		7.3
(-0.1)
A 		7.6
(0.1)
A 		6
B 29.4
(3)
A 		4.2
(-2.5)
A 		18.2
(0.5)
A 		7.5
(-1.8)
A 		7.1
(-1.9)
A 		2.1
(-3)
A 		27
C 2.9
(-2.9)
A 		22.6
(0.1)
A 		42
(3)
A 		15.8
(-0.9)
A 		30.2
(1.2)
A 		2.2
(-3)
A 		40
avr 14.3
(0.2) 		10.4
(-1) 		23.4
(3) 		10.8
(-0.9) 		14.9
(0.4) 		4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9
(3)
A 		1.2
(-2.9)
A 		2.6
(-1.8)
A 		1
(-3)
A 		8
B 4.1
(-0.6)
A 		1.5
(-2.8)
A 		8.4
(3)
A 		1.2
(-3)
A 		7
C 2.6
(0.3)
A 		1.7
(-2.4)
A 		1.5
(-3)
A 		3.5
(3)
A 		2
avr 5.2
(3) 		1.5
(-3) 		4.2
(1.4) 		1.9
(-2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(0)
A 		1.5
(-3)
A 		2.1
(1.5)
A 		2.3
(3)
A 		2.2
(2.3)
A 		1.8
(-0.7)
A 		1
B 10.2
(3)
A 		1.4
(-2.6)
A 		4.4
(-0.7)
A 		2
(-2.2)
A 		2.9
(-1.7)
A 		0.8
(-3)
A 		9
C 1.1
(-2.8)
A 		6.9
(0.7)
A 		10.7
(3)
A 		3.2
(-1.5)
A 		9.8
(2.5)
A 		0.7
(-3)
A 		10
avr 4.4
(1.3) 		3.3
(-0.1) 		5.7
(3) 		2.5
(-1.2) 		5
(2.1) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15005
Sequence Type Exemplar sequence
Representative Public ID ZK6.2 NCBI
Target Description ZK6.2 /REP_DB=WormBase Gene ID /WP=CE18439 /TR=O61872 /GB=AAG45572.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070790 NCBI Caenorhabditis elegans ZK6.2 (ZK6.2) mRNA, complete cds. 11/11 None
SNAP00000041441 ENSEMBL cdna:SNAP chromosome:CEL140:V:404379:405826:1 11/11 None
GENEFINDER00000041450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:404448:405826:1 11/11 None
ZK6.2 ENSEMBL cdna:known chromosome:CEL140:V:404448:405826:1 gene:ZK6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:404447-405826(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-252
Ensembl ZK6.2
Entrez Gene 191203 Entrez gene
SwissProt O61872 EMBL-EBI
WormBase CE18439 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG45572 Hypothetical protein ZK6.2 [Caenorhabditis elegans] ref|NP_503191.1| ZK6.2 [Caenorhabditis elegans] 0.0
blast AAG45578 Hypothetical protein ZK6.1 [Caenorhabditis elegans] ref|NP_503192.1| ZK6.1 [Caenorhabditis elegans] 1.0E-127
blast AAG45579 Hypothetical protein ZK6.4 [Caenorhabditis elegans] ref|NP_503188.1| ZK6.4 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.8E-51
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.4E-5
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.8E-51
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.4E-5
Sequence
Target Sequence 
>C. ELEGANS:189670_AT
ctgctgcctggttacggtagactacatgaagaaatttcctttcgtgaacctgttacgata
tgatgatcagaagttcatactaaaagaatattacataagactcaaagctattatcagcgc
aattagatctgtgagatctgggaaagatcgactgatattccccgatggctccgatgttct
ggcccaggcttatttggagtgggacctcacaaggatcccatcaaatttgatccaaaaaat
tcgttaccgactagtcgccagacttatcgagctaaagataactaacgaggaacacttatt
attgagcgtattgatatactgcaacccaggatcgcaacaactatctcaaaacgggaagat
tcttctaacctcctaccagagcctgtacagctccgcacttcttcaatactgtctgataac
ttatcaaagagctggaccatcccggttcacagagcttctgggagtctacgaaaccataga
agttcattacaatgatctgatcagttatcacgtcctggtacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTGCCTGGTTACGGTAGACTAC 274 209 459 Antisense
TTTCCTTTCGTGAACCTGTTACGAT 612 667 493 Antisense
CGATGTTCTGGCCCAGGCTTATTTG 191 247 630 Antisense
GGCTTATTTGGAGTGGGACCTCACA 31 537 645 Antisense
GGACCTCACAAGGATCCCATCAAAT 535 523 660 Antisense
AATTCGTTACCGACTAGTCGCCAGA 370 173 696 Antisense
TAGTCGCCAGACTTATCGAGCTAAA 379 653 710 Antisense
GATATACTGCAACCCAGGATCGCAA 433 425 771 Antisense
GGATCGCAACAACTATCTCAAAACG 11 513 787 Antisense
AGAGCTTCTGGGAGTCTACGAAACC 54 45 909 Antisense
GATCAGTTATCACGTCCTGGTACAG 96 421 957 Antisense
Sequence Source Affymetrix Proprietary Database