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[189664_s_at] beta-transducin

Description D2013.2 /REP_DB=WormBase Gene ID /WP=CE00928 /TR=SW:Q18964 /GB=CAA87770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=beta-transducin
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 89      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 98      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 254.4
(-1.4)
P 		260.3
(-1.3)
P 		193.9
(-3)
P 		427.9
(3)
P 		234
B 279
(-1.9)
P 		226.8
(-3)
P 		255.5
(-2.4)
P 		505.8
(3)
P 		279
C 230
(-2.7)
P 		221.8
(-3)
P 		258.3
(-1.8)
P 		403.7
(3)
P 		182
avr 254.5
(-2.5) 		236.3
(-3) 		235.9
(-3) 		445.8
(3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 267.4
(1)
P 		185.7
(-3)
P 		245.7
(-0)
P 		249.6
(0.1)
P 		305.1
(2.9)
P 		307.5
(3)
P 		122
B 257
(-1.8)
P 		208.6
(-3)
P 		243.4
(-2.2)
P 		255.3
(-1.9)
P 		456.9
(2.9)
P 		460.1
(3)
P 		252
C 271.9
(-1.8)
P 		216.6
(-3)
P 		268.2
(-1.9)
P 		256.9
(-2.2)
P 		367.1
(0.1)
P 		504.9
(3)
P 		288
avr 265.4
(-1.3) 		203.6
(-3) 		252.4
(-1.7) 		253.9
(-1.6) 		376.4
(1.7) 		424.2
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 92.6
(3)
P 		56.5
(-2.2)
P 		50.7
(-3)
P 		62.6
(-1.3)
P 		42
B 89
(0.8)
P 		56
(-3)
P 		59.2
(-2.6)
P 		107.8
(3)
P 		52
C 76.1
(-0.2)
P 		63.8
(-3)
P 		90
(3)
P 		68.1
(-2)
P 		26
avr 85.9
(3) 		58.8
(-3) 		66.6
(-1.3) 		79.5
(1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 49.3
(-3)
P 		66.1
(-0.6)
P 		53.5
(-2.4)
P 		63.3
(-1)
P 		92.1
(3)
P 		74.9
(0.6)
P 		43
B 89.4
(-1.6)
P 		69.4
(-2.5)
P 		59.1
(-3)
P 		67.6
(-2.6)
P 		185.6
(3)
P 		171.6
(2.3)
P 		127
C 100.8
(-0.5)
P 		66.1
(-2.3)
P 		68.3
(-2.2)
P 		51.7
(-3)
P 		118.8
(0.4)
P 		169
(3)
P 		117
avr 79.8
(-1.5) 		67.2
(-2.5) 		60.3
(-3) 		60.9
(-3) 		132.2
(2.5) 		138.5
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3509
Sequence Type Exemplar sequence
Representative Public ID D2013.2 NCBI
Target Description D2013.2 /REP_DB=WormBase Gene ID /WP=CE00928 /TR=SW:Q18964 /GB=CAA87770.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=beta-transducin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063582 NCBI Caenorhabditis elegans D2013.2 (beta-transducin) mRNA, complete cds. 11/11 None
SNAP00000019823 ENSEMBL cdna:SNAP chromosome:CEL140:II:9319790:9321500:1 11/11 None
GENEFINDER00000019835 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9319790:9321500:1 11/11 None
D2013.2 ENSEMBL cdna:known chromosome:CEL140:II:9319777:9321790:1 gene:D2013.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9319786-9321497(+) 100.0 100.0
Public Domain and Genome References
Gene Title beta-transducin
Ensembl D2013.2
Entrez Gene 174475 Entrez gene
SwissProt Q18964 EMBL-EBI
WormBase CE00928 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602730_AT similar to WD repeat- and FYVE domain-containing protein 2 cfa
CANINE_2:CFAAFFX.7340.1.S1_AT similar to WD repeat- and FYVE domain-containing protein 2 cfa
DROSOPHILA_2:1624406_AT dm
DROSGENOME1:154968_AT dm
HG-U133_PLUS_2:227490_AT WD repeat and FYVE domain containing 2 hs
HG-U133B:227490_AT WD repeat and FYVE domain containing 2 hs
HU35KSUBB:RC_T95641_AT WD repeat and FYVE domain containing 2 hs
U133_X3P:HS.16400.0.A1_3P_AT WD repeat and FYVE domain containing 2 hs
HG-U95B:58323_AT WD repeat and FYVE domain containing 2 hs
U133_X3P:HS2.352604.1.S1_3P_X_AT WD repeat and FYVE domain containing 2 hs
U133_X3P:1560112_3P_AT WD repeat and FYVE domain containing 2 hs
HG-U133_PLUS_2:1560112_AT WD repeat and FYVE domain containing 2 hs
HG-U95D:75991_AT WD repeat and FYVE domain containing 2 hs
HG-U133_PLUS_2:240279_AT WD repeat and FYVE domain containing 2 hs
HG-U133B:240279_AT WD repeat and FYVE domain containing 2 hs
HG-U95B:55782_AT WD repeat and FYVE domain containing 2 hs
HG-U95D:67925_AT WD repeat and FYVE domain containing 2 hs
HU35KSUBB:RC_AA020781_AT WD repeat and FYVE domain containing 2 hs
U133_X3P:HS.188920.0.A1_3P_AT WD repeat and FYVE domain containing 2 hs
MOE430A:1434517_AT WD repeat and FYVE domain containing 2 mm
MOUSE430A_2:1434517_AT WD repeat and FYVE domain containing 2 mm
MOUSE430_2:1434517_AT WD repeat and FYVE domain containing 2 mm
MG-U74AV2:103211_AT WD repeat and FYVE domain containing 2 (Wdfy2), mRNA mm
MG-U74CV2:132029_AT WD repeat and FYVE domain containing 2 (Wdfy2), mRNA mm
MG-U74AV2:161723_AT WD repeat and FYVE domain containing 2 (Wdfy2), mRNA mm
MU11KSUBA:AA239477_S_AT WD repeat and FYVE domain containing 2 (Wdfy2), mRNA mm
RAE230A:1372837_AT WD repeat and FYVE domain containing 2 (predicted) rn
RAT230_2:1372837_AT WD repeat and FYVE domain containing 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87770 Hypothetical protein D2013.2 [Caenorhabditis elegans] ref|NP_495983.1| D2013.2 [Caenorhabditis elegans] sp|Q18964|YLN2_CAEEL Hypothetical WD-repeat protein D2013.2 in chromosome II 0.0
blast CAE72913 Hypothetical protein CBG20231 [Caenorhabditis briggsae] 0.0
blast AAQ94581 WD repeat and FYVE domain containing 2 [Danio rerio] ref|NP_991308.1| WD repeat and FYVE domain containing 2 [Danio rerio] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 1.1E-24
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0038
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.6E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.62
Sequence
Target Sequence 
>C. ELEGANS:189664_S_AT
ctcgctcacatgggacggaaataagaaagttttgtattctggaagcagtgatcatctcat
cataatgtgggatatcggaggaggaagaggagaagcttatgagcttaacggacacaatgg
aaaagtgacaacactatgcgcagctccagcagccaaacgtctgttctcggctgacgaaca
cggaaagctcatgtgctgggacatgaattgcaagagagttgagactcctgaatggaaaac
ttcggattgctgtcagaaatgcaatcaaccgttcttctggaatcttcaagcaatgtggca
gaggaaagtggtcggattgagacaacatcactgcagaacctgtggatcagcagtctgtgg
atcttgctgtgacaactggaccacctatccaccaatgggatatgagacgaaaattcgcat
ttgtaatgactgcaatgcacgaatgaaagataatccacagaatttcaaccttactccact
tgcaattccacatgaaatccatactggaatcactgctatgcatctccaggaaactctcgg
acttctagttaccagtggacagaatcgtgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCTCACATGGGACGGAAATAAG 21 233 636 Antisense
CTGGAAGCAGTGATCATCTCATCAT 213 241 674 Antisense
GATCATCTCATCATAATGTGGGATA 462 419 685 Antisense
GTGGGATATCGGAGGAGGAAGAGGA 604 487 702 Antisense
ACGGAAAGCTCATGTGCTGGGACAT 572 93 815 Antisense
TGGAAAACTTCGGATTGCTGTCAGA 395 545 868 Antisense
AGAAATGCAATCAACCGTTCTTCTG 89 73 890 Antisense
ATGTGGCAGAGGAAAGTGGTCGGAT 39 49 928 Antisense
GGTCGGATTGAGACAACATCACTGC 359 503 945 Antisense
AATTCGCATTTGTAATGACTGCAAT 283 177 1047 Antisense
GTTACCAGTGGACAGAATCGTGTGA 484 445 1183 Antisense
Sequence Source Affymetrix Proprietary Database