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[189663_at]

Description Y62E10A.15 /REP_DB=WormBase Gene ID /WP=CE24539 /TR=Q9U1X2 /GB=CAB60602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 99      4grp_total > 04      6grp_cgc > 89      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 28.6
(-3)
A 		34.3
(-2.4)
A 		51.4
(-0.6)
A 		85.8
(3)
A 		57
B 59.1
(2.4)
A 		5.8
(-3)
A 		34
(-0.2)
A 		65.4
(3)
A 		60
C 56.1
(0.5)
A 		62.3
(1.5)
P 		32.4
(-3)
A 		72.7
(3)
A 		40
avr 47.9
(-1) 		34.1
(-3) 		39.3
(-2.2) 		74.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 67.1
(-2.3)
A 		44.2
(-2.7)
P 		23
(-3)
A 		87.5
(-2)
A 		414.6
(3)
P 		407
(2.9)
P 		392
B 40.4
(-2.8)
P 		32.5
(-2.9)
P 		29.1
(-3)
A 		87
(-2)
A 		387.9
(3)
P 		261.3
(0.9)
P 		359
C 36.7
(-3)
A 		44.9
(-2.9)
A 		35.5
(-3)
A 		78.9
(-2.4)
A 		491.1
(3)
P 		279.5
(0.2)
P 		456
avr 48.1
(-2.7) 		40.5
(-2.8) 		29.2
(-3) 		84.5
(-2.2) 		431.2
(3) 		315.9
(1.3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.4
(-0.1)
A 		7.5
(-3)
A 		13.4
(3)
A 		12.6
(2.2)
A 		6
B 18.8
(3)
A 		1.4
(-3)
A 		7.9
(-0.8)
A 		13.9
(1.3)
A 		17
C 18.6
(3)
A 		17.9
(2.4)
P 		11.3
(-3)
A 		12.3
(-2.2)
A 		7
avr 15.9
(3) 		8.9
(-3) 		10.9
(-1.3) 		12.9
(0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 12.4
(-2.6)
A 		15.7
(-2.5)
P 		5
(-3)
A 		22.2
(-2.1)
A 		125.1
(3)
P 		99.1
(1.7)
P 		120
B 14
(-2.7)
P 		10.8
(-2.9)
P 		7.1
(-3)
A 		23
(-2.4)
A 		157.6
(3)
P 		97.4
(0.6)
P 		151
C 13.6
(-2.8)
A 		13.7
(-2.8)
A 		9
(-3)
A 		15.9
(-2.7)
A 		158.9
(3)
P 		93.6
(0.4)
P 		150
avr 13.3
(-2.7) 		13.4
(-2.7) 		7
(-3) 		20.4
(-2.4) 		147.2
(3) 		96.7
(0.8) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9979
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.15 NCBI
Target Description Y62E10A.15 /REP_DB=WormBase Gene ID /WP=CE24539 /TR=Q9U1X2 /GB=CAB60602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008084 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13401275:13412929:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008097 8/11 Cross Hyb Matching Probes None
Y62E10A.15 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13401280-13403717(+) 94.55 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92741 Hypothetical protein H02I12.8 [Caenorhabditis elegans] emb|CAB07222.3| Hypothetical protein H02I12.8 [Caenorhabditis elegans] ref|NP_502152.3| CYtochrome P450 family member (cyp-31A2) [Caenorhabditis elegans] 1.0E-154
blast NP_500637 CYtochrome P450 family member (cyp-31A3) [Caenorhabditis elegans] gb|AAF60444.1| Cytochrome p450 family protein 31A3 [Caenorhabditis elegans] 1.0E-149
blast CAE58606 Hypothetical protein CBG01773 [Caenorhabditis briggsae] 1.0E-134
Protein Families
Method ID Description E-Value
p450 CP11_MACFA Animalia; CYP1A1; mon; CP11_MACFA; Monkey; P33616 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 7.5E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000008084 1 2-21
Sequence
Target Sequence 
>C. ELEGANS:189663_AT
attgtgttgcctcggtgtagcagatgaagaagttgatgttctctccgtcatcaccctttg
cactcttgacatcatctgcgaaacttccatgggaaaagctatcggtgctcaactcgcgga
gaataacgagtatgtatgggcggtgcacacaattaataagctgatttcaaagcgaacaaa
taatccgttgatgtggaattcatttatttacaatttaacagaagacggacggactcatga
aaaatgcctacatattcttcatgatttcacgaagaaagtaattgtcgagagaaaggaagc
tctacaggatagcgattataagatggaaggtcgtctcgcattctcgcgtcaaatatgctg
cacaatacgcattctcagaattttgtgttcccgtaatagaaacgcatttattcacaacaa
aagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTGTTGCCTCGGTGTAGCAGAT 261 5 486 Antisense
GCCTCGGTGTAGCAGATGAAGAAGT 24 283 494 Antisense
GGCGGTGCACACAATTAATAAGCTG 338 541 624 Antisense
TTTAACAGAAGACGGACGGACTCAT 533 625 699 Antisense
AAAATGCCTACATATTCTTCATGAT 246 133 726 Antisense
GGAAGCTCTACAGGATAGCGATTAT 413 531 780 Antisense
TCTCGCATTCTCGCGTCAAATATGC 509 611 819 Antisense
CGCATTCTCGCGTCAAATATGCTGC 433 253 822 Antisense
CATTCTCAGAATTTTGTGTTCCCGT 262 217 855 Antisense
GTGTTCCCGTAATAGAAACGCATTT 505 485 870 Antisense
AAACGCATTTATTCACAACAAAAGT 698 125 885 Antisense
Sequence Source Affymetrix Proprietary Database