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[189662_at]

Description T19A6.2A /REP_DB=WormBase Gene ID /WP=CE20083 /TR=Q9XXN4 /GB=CAA16512.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AUTOANTIGEN NGP-1
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 87      6grp_total > 57      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6848
1 2 3 4 range
A 1327.3
(-2.2)
P 		438
(-3)
P 		428.8
(-3)
P 		7276.8
(3)
P 		6848
B 965.1
(-2.4)
P 		443.4
(-3)
P 		454.4
(-3)
P 		5303.9
(3)
P 		4861
C 1074.4
(-2.4)
P 		446.6
(-3)
P 		600.5
(-2.8)
P 		6355.9
(3)
P 		5909
avr 1122.3
(-2.3) 		442.7
(-3) 		494.6
(-2.9) 		6312.2
(3) 		5870

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1002
1 2 3 4 5 6 range
A 1077.1
(-2.4)
P 		1001.2
(-3)
P 		1133
(-2)
P 		1162.7
(-1.7)
P 		1032.5
(-2.8)
P 		1769.4
(3)
P 		768
B 1198.7
(-0.3)
P 		1010.8
(-1.5)
P 		767.9
(-3)
P 		1081.8
(-1.1)
P 		929
(-2)
P 		1738.6
(3)
P 		971
C 1057.4
(-1.3)
P 		1182
(-0.2)
P 		878.6
(-2.9)
P 		1538.2
(3)
P 		862.5
(-3)
P 		1437.4
(2.1)
P 		676
avr 1111.1
(-1.5) 		1064.7
(-1.9) 		926.5
(-3) 		1260.9
(-0.2) 		941.3
(-2.9) 		1648.5
(3) 		722
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1035
1 2 3 4 range
A 483.3
(-0.6)
P 		95.1
(-3)
P 		112.1
(-2.9)
P 		1065.2
(3)
P 		970
B 307.8
(-1.8)
P 		109.5
(-3)
P 		105.3
(-3)
P 		1130.3
(3)
P 		1025
C 355.7
(-1.6)
P 		128.4
(-3)
P 		209.3
(-2.5)
P 		1071.7
(3)
P 		943
avr 382.3
(-1.3) 		111
(-3) 		142.2
(-2.8) 		1089.1
(3) 		978

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 198.6
(-3)
P 		356.1
(1.1)
P 		246.8
(-1.8)
P 		294.9
(-0.5)
P 		311.6
(-0.1)
P 		430.8
(3)
P 		232
B 417.1
(-0)
P 		336.5
(-1.1)
P 		186.5
(-3)
P 		286.5
(-1.7)
P 		377.4
(-0.5)
P 		648.3
(3)
P 		462
C 391.9
(0.9)
P 		360.6
(0.2)
P 		223.6
(-3)
P 		309.3
(-1)
P 		279.1
(-1.7)
P 		481.2
(3)
P 		258
avr 335.9
(-0.7) 		351.1
(-0.4) 		219
(-3) 		296.9
(-1.4) 		322.7
(-0.9) 		520.1
(3) 		301
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1703
Sequence Type Exemplar sequence
Representative Public ID T19A6.2A NCBI
Target Description T19A6.2A /REP_DB=WormBase Gene ID /WP=CE20083 /TR=Q9XXN4 /GB=CAA16512.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AUTOANTIGEN NGP-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059874(10), NM_059875(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059874 NCBI Caenorhabditis elegans Nuclear/nucleolar GTP-binding Protein family member (ngp-1) (ngp-1) mRNA, complete cds. 10/11 None
NM_059875 NCBI Caenorhabditis elegans Nuclear/nucleolar GTP-binding Protein family member (ngp-1) (ngp-1) mRNA, complete cds. 10/11 None
SNAP00000004350 ENSEMBL cdna:SNAP chromosome:CEL140:I:8402874:8406576:1 10/11 None
GENEFINDER00000004356 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8402874:8406576:1 11/11 None
T19A6.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:8402851:8406744:1 gene:T19A6.2 10/11 None
T19A6.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:8402853:8406746:1 gene:T19A6.2 10/11 None
T19A6.2b.3 ENSEMBL cdna:known chromosome:CEL140:I:8402853:8406576:1 gene:T19A6.2 10/11 None
T19A6.2b.2 ENSEMBL cdna:known chromosome:CEL140:I:8402876:8406576:1 gene:T19A6.2 10/11 None
T19A6.2b.1 ENSEMBL cdna:known chromosome:CEL140:I:8402968:8406576:1 gene:T19A6.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026450 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172624 3 2 NM_059874 189662_at (10)
NM_059875 189662_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8402804-8406507(+) 100.0 100.0
Public Domain and Genome References
Ensembl T19A6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16512 Hypothetical protein T19A6.2a [Caenorhabditis elegans] ref|NP_492275.2| Nuclear/nucleolar GTP-binding Protein family member (ngp-1) [Caenorhabditis elegans] 0.0
blast CAI79270 Hypothetical protein T19A6.2c [Caenorhabditis elegans] ref|NP_001021621.1| Nuclear/nucleolar GTP-binding Protein family member (ngp-1) [Caenorhabditis elegans] 0.0
blast CAE60434 Hypothetical protein CBG04042 [Caenorhabditis briggsae] 0.0
blast CAA16514 Hypothetical protein T19A6.2b [Caenorhabditis elegans] ref|NP_492276.2| Nuclear/nucleolar GTP-binding Protein family member (ngp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 5.2E-106
Pfam IPR002917 EMBL-EBI GTP-binding protein, HSR1-related 5.2E-106
Sequence
Target Sequence 
>C. ELEGANS:189662_AT
gcaattgcctttggatgctcaactcgagcttgatgatgtggcaagaatatgccataatag
aaaatcagaaaaaaatcgaggaagactgaaaactccaagtaaaaactcgaattttcaaaa
ctcgctaaattacctgtttgaattccctcctgcaagaaattcgaactggaaatttagcca
aaaaaaaaatggaggtccagatgaggatgatgacgaagcaattgacgatgaagaacagga
agaactgacagaaattggatcaacctgttctggactcacagatctttctggaatcagtga
tttggctggagacttgtcagatgctgatgatgtggccgatgatgatgaaaagccatcgtc
cagtgattctaagacaaagaaatcaaagactgatgtggcgagcgtacgaacacgtggaaa
gcgtggaggaaagaaggcgaataaggctaaattatccggaaagactatcgttcaggccgc
gtcggaaaagaaggacaagagcgtcgtcgaattcgcgaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTGCCTTTGGATGCTCAACTC 311 323 1518 Antisense
GATGCTCAACTCGAGCTTGATGATG 596 413 1531 Antisense
AATTCCCTCCTGCAAGAAATTCGAA 212 177 1658 Antisense
TGGATCAACCTGTTCTGGACTCACA 30 551 1773 Antisense
TGGACTCACAGATCTTTCTGGAATC 41 549 1788 Antisense
GGCTGGAGACTTGTCAGATGCTGAT 552 539 1821 Antisense
GATGCTGATGATGTGGCCGATGATG 511 413 1837 Antisense
GAAAAGCCATCGTCCAGTGATTCTA 686 353 1864 Antisense
GATGTGGCGAGCGTACGAACACGTG 45 407 1909 Antisense
CTATCGTTCAGGCCGCGTCGGAAAA 585 219 1982 Antisense
GAGCGTCGTCGAATTCGCGAAACCA 481 375 2016 Antisense
Sequence Source Affymetrix Proprietary Database