[Home] | [Total List]

[189661_at] nucleolar protein

Description W07E6.1 /REP_DB=WormBase Gene ID /WP=CE28259 /TR=Q9TYV5 /GB=AAC78177.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=nucleolar protein
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 91      6grp_total > 48      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 482.5
(3)
P 		358.5
(0.2)
P 		386.4
(0.8)
P 		217.9
(-3)
P 		265
B 486.1
(2.8)
P 		456.1
(2)
P 		491.4
(3)
P 		281.3
(-3)
P 		210
C 501.3
(1.4)
P 		467.1
(0.7)
P 		582.6
(3)
P 		282.2
(-3)
P 		300
avr 490
(3) 		427.2
(1.4) 		486.8
(2.9) 		260.5
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 236.1
(-0)
P 		244.2
(0.3)
P 		154.1
(-3)
P 		192.6
(-1.6)
P 		158.3
(-2.8)
P 		319.8
(3)
P 		166
B 223.7
(3)
P 		192.6
(0.1)
P 		159.3
(-3)
P 		175.6
(-1.5)
P 		185.9
(-0.5)
P 		178.8
(-1.2)
P 		64
C 255.9
(3)
P 		175.3
(-3)
P 		214.1
(-0.1)
P 		214
(-0.1)
P 		189.2
(-2)
P 		243.6
(2.1)
P 		81
avr 238.6
(2.3) 		204
(-0.6) 		175.8
(-3) 		194.1
(-1.5) 		177.8
(-2.8) 		247.4
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 175.7
(3)
P 		77.8
(-1.1)
P 		101
(-0.1)
P 		31.9
(-3)
P 		144
B 155
(3)
P 		112.6
(0.3)
P 		113.9
(0.4)
P 		59.9
(-3)
P 		95
C 165.9
(1.6)
P 		134.3
(0.3)
P 		203
(3)
P 		47.6
(-3)
P 		155
avr 165.5
(3) 		108.2
(0.1) 		139.3
(1.7) 		46.5
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 43.5
(-1.9)
P 		86.8
(3)
P 		33.6
(-3)
P 		48.9
(-1.3)
P 		47.8
(-1.4)
P 		77.9
(2)
P 		53
B 77.8
(3)
P 		64.1
(0.9)
P 		38.7
(-3)
P 		46.5
(-1.8)
P 		75.5
(2.6)
P 		66.7
(1.3)
P 		39
C 94.9
(3)
P 		53.5
(-1.8)
P 		54.5
(-1.7)
P 		43
(-3)
P 		61.2
(-0.9)
P 		81.6
(1.5)
P 		52
avr 72.1
(2.4) 		68.1
(1.7) 		42.3
(-3) 		46.1
(-2.3) 		61.5
(0.5) 		75.4
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5056
Sequence Type Exemplar sequence
Representative Public ID W07E6.1 NCBI
Target Description W07E6.1 /REP_DB=WormBase Gene ID /WP=CE28259 /TR=Q9TYV5 /GB=AAC78177.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=nucleolar protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061341 NCBI Caenorhabditis elegans W07E6.1 (W07E6.1) mRNA, complete cds. 11/11 None
SNAP00000002740 ENSEMBL cdna:SNAP chromosome:CEL140:II:471469:475934:-1 11/11 None
GENEFINDER00000002759 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:471511:475934:-1 11/11 None
W07E6.1.2 ENSEMBL cdna:known chromosome:CEL140:II:471109:475939:-1 gene:W07E6.1 11/11 None
W07E6.1.1 ENSEMBL cdna:known chromosome:CEL140:II:471254:475939:-1 gene:W07E6.1 11/11 None
W07E6.1.3 ENSEMBL cdna:known chromosome:CEL140:II:471289:476269:-1 gene:W07E6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:471529-475934(-) 100.0 100.0
Public Domain and Genome References
Gene Title nucleolar protein
Ensembl W07E6.1
Entrez Gene 173437 Entrez gene
SwissProt Q9TYV5 EMBL-EBI
WormBase CE28259 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16762_AT nucleolar protein, putative at
ATH1-121501:253975_AT nucleolar protein, putative at
CANINE:1591025_AT similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) cfa
CANINE_2:CFA.12340.1.A1_AT similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) cfa
CANINE_2:CFA.12340.1.A1_S_AT similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) cfa
CANINE_2:CFAAFFX.23130.1.S1_AT similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) cfa
DROSOPHILA_2:1624750_AT dm
DROSGENOME1:153160_AT dm
CHICKEN:GGA.5513.1.S1_A_AT nucleolar protein 1, 120kDa gga
HG-U95AV2:1979_S_AT nucleolar protein 1, 120kDa hs
HC-G110:1979_S_AT nucleolar protein 1, 120kDa hs
HU35KSUBA:RC_AA609786_S_AT nucleolar protein 1, 120kDa hs
U133_X3P:HS.15243.0.S1_3P_AT nucleolar protein 1, 120kDa hs
HG-U133A_2:214427_AT nucleolar protein 1, 120kDa hs
HG-FOCUS:214427_AT nucleolar protein 1, 120kDa hs
HG-U133_PLUS_2:214427_AT nucleolar protein 1, 120kDa hs
HG-U133A:214427_AT nucleolar protein 1, 120kDa hs
MU11KSUBB:MSA.3870.0_F_AT nucleolar protein 1 mm
MU11KSUBB:MSA.29988.0_S_AT nucleolar protein 1 mm
MG-U74AV2:96804_AT nucleolar protein 1 mm
MOE430A:1424019_AT nucleolar protein 1 mm
MOUSE430A_2:1424019_AT nucleolar protein 1 mm
MOUSE430_2:1424019_AT nucleolar protein 1 mm
MU19KSUBA:TC23879_AT Nucleolar protein 1, mRNA (cDNA clone MGC:6746 IMAGE:3592148) mm
MU19KSUBA:TC23880_F_AT Nucleolar protein 1, mRNA (cDNA clone MGC:6746 IMAGE:3592148) mm
MU19KSUBA:TC23880_I_AT Nucleolar protein 1, mRNA (cDNA clone MGC:6746 IMAGE:3592148) mm
RAE230B:1383752_AT nucleolar protein 1 (predicted) rn
RAT230_2:1383752_AT nucleolar protein 1 (predicted) rn
YEAST_2:1778912_AT Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus; constituent of 66S pre-ribosomal particles Sc
Protein Similarities
Method ID Description E-Value
blast AAC78177 Hypothetical protein W07E6.1 [Caenorhabditis elegans] ref|NP_493742.1| W07E6.1 [Caenorhabditis elegans] 0.0
blast CAE62879 Hypothetical protein CBG07065 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001678 EMBL-EBI Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 9.2E-117
Sequence
Target Sequence 
>C. ELEGANS:189661_AT
cgtgctctgtactcgtcgaggaaaacgaagccgtcgtcaatttccttctggaacgtcgtc
actgtgaacttgttccaactggattatcgattggtgtggatggatatacacgattccgtg
attatcgtttccatccgtcactttcaatgactaaacgctattatccacatgttcataata
ttgatggattctacgtggcaaagatcaagaagttgtctaatgcgaaaatgagcaagcagg
gtgtcatggagaaagaaaaggaaaaggccgcccaaaaatcgcagaacaagaagaataagg
ctgaagctgaggcttctgagtcttcagatgatgaagaggagaagaagaatggtgtagagg
ttaatggacagaagaagccagcgaaaaagcagcagcaaaagaagcaaaaagccgatggtg
atgactcggatgatgataataatgctccaatgaaaaacattggctccggagctcgtgcga
acaagaagcgtcgtaatcagaagaaggcagccgagaagcaggccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGCTCTGTACTCGTCGAGGAAAA 135 245 1325 Antisense
AATTTCCTTCTGGAACGTCGTCACT 456 173 1363 Antisense
ACGTCGTCACTGTGAACTTGTTCCA 192 93 1377 Antisense
GATTCCGTGATTATCGTTTCCATCC 377 433 1436 Antisense
GTTTCCATCCGTCACTTTCAATGAC 588 449 1451 Antisense
AAACGCTATTATCCACATGTTCATA 195 127 1477 Antisense
GAAAAGGCCGCCCAAAAATCGCAGA 503 353 1585 Antisense
GAAGCTGAGGCTTCTGAGTCTTCAG 307 343 1627 Antisense
AAAACATTGGCTCCGGAGCTCGTGC 596 129 1778 Antisense
GAGCTCGTGCGAACAAGAAGCGTCG 599 387 1793 Antisense
GAAGGCAGCCGAGAAGCAGGCCGCT 561 333 1827 Antisense
Sequence Source Affymetrix Proprietary Database