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[189659_s_at] arginine kinase

Description ZC434.8 /REP_DB=WormBase Gene ID /WP=CE06583 /TR=SW:Q27535 /GB=CAB00062.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=arginine kinase
Cluster 6grp_total > 97      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1139
1 2 3 4 range
A 181.3
(-3)
A 		380.6
(-2)
P 		561.5
(-1)
P 		1320.3
(3)
P 		1139
B 189.2
(-3)
A 		447.9
(-1.4)
P 		484.5
(-1.1)
P 		1131.5
(3)
P 		942
C 228.1
(-3)
A 		482.6
(-1.5)
A 		500
(-1.4)
P 		1268.1
(3)
P 		1040
avr 199.5
(-3) 		437
(-1.6) 		515.3
(-1.2) 		1240
(3) 		1041

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2317
1 2 3 4 5 6 range
A 152.4
(-3)
A 		290
(-2.6)
A 		419.7
(-2.3)
P 		628.3
(-1.8)
P 		1612.3
(0.8)
P 		2469
(3)
P 		2317
B 169.9
(-3)
A 		266.6
(-2.7)
M 		365.5
(-2.4)
P 		625
(-1.7)
P 		1971.6
(2.3)
P 		2220.6
(3)
P 		2051
C 175.7
(-3)
A 		310.5
(-2.6)
M 		444.8
(-2.3)
P 		614.2
(-1.8)
P 		1634.3
(0.9)
P 		2432
(3)
P 		2256
avr 166
(-3) 		289
(-2.7) 		410
(-2.3) 		622.5
(-1.8) 		1739.4
(1.3) 		2373.9
(3) 		2208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 66
(-3)
A 		82.6
(-2.2)
P 		146.8
(0.8)
P 		193.3
(3)
P 		127
B 60.3
(-3)
A 		110.6
(-1.3)
P 		112.3
(-1.3)
P 		241.1
(3)
P 		181
C 75.5
(-3)
A 		138.8
(-0.3)
A 		174.3
(1.3)
P 		213.8
(3)
P 		138
avr 67.3
(-3) 		110.7
(-1.3) 		144.5
(0.1) 		216.1
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 800
1 2 3 4 5 6 range
A 28.1
(-3)
A 		103.1
(-2.2)
A 		91.4
(-2.3)
P 		159.3
(-1.6)
P 		486.5
(1.8)
P 		601.1
(3)
P 		573
B 59.1
(-3)
A 		88.7
(-2.8)
M 		88.8
(-2.8)
P 		165.5
(-2.2)
P 		801
(2.8)
P 		828.1
(3)
P 		769
C 65.1
(-3)
A 		94.7
(-2.8)
M 		113.2
(-2.6)
P 		123.5
(-2.5)
P 		528.8
(0.7)
P 		814.1
(3)
P 		749
avr 50.8
(-3) 		95.5
(-2.6) 		97.8
(-2.6) 		149.4
(-2.2) 		605.4
(1.8) 		747.8
(3) 		697
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189659_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.648
Sequence Type Exemplar sequence
Representative Public ID ZC434.8 NCBI
Target Description ZC434.8 /REP_DB=WormBase Gene ID /WP=CE06583 /TR=SW:Q27535 /GB=CAB00062.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=arginine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060313 NCBI Caenorhabditis elegans ZC434.8 (ZC434.8) mRNA, complete cds. 11/11 None
SNAP00000018741 ENSEMBL cdna:SNAP chromosome:CEL140:I:10356221:10357567:-1 11/11 None
GENEFINDER00000018747 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10356221:10357441:-1 11/11 None
ZC434.8 ENSEMBL cdna:known chromosome:CEL140:I:10356177:10357491:-1 gene:ZC434.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10356151-10357372(-) 100.0 100.0
Public Domain and Genome References
Gene Title arginine kinase
Ensembl ZC434.8
Entrez Gene 172907 Entrez gene
SwissProt Q27535 EMBL-EBI
WormBase CE06583 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
16772 transferase activity, transferring phosphorus-containing groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00062 Hypothetical protein ZC434.8 [Caenorhabditis elegans] ref|NP_492714.1| ZC434.8 [Caenorhabditis elegans] sp|Q27535|KARG2_CAEEL Probable arginine kinase ZC434.8 (AK) 0.0
blast CAE60547 Hypothetical protein CBG04174 [Caenorhabditis briggsae] 0.0
blast AAO21426 Hypothetical protein F46H5.3b [Caenorhabditis elegans] ref|NP_872253.1| F46H5.3b [Caenorhabditis elegans] 1.0E-149
blast AAB37022 Hypothetical protein F46H5.3a [Caenorhabditis elegans] ref|NP_509217.2| F46H5.3a [Caenorhabditis elegans] sp|Q10454|KARG1_CAEEL Probable arginine kinase F46H5.3 (AK) 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 8.0E-36
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 8.0E-36
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189659_S_AT
atcaccgatcccgagctcaagggaacgtactaccctctgactggaatggatgaggagacg
aagaagaagctcattgctgatcacttcctcttcaaagaaggtgatcgcttcttgaaggct
gccaatgccaaccgttattggccaaacggacgtggaatcttccacaatgagaagaagact
ttcttggtttgggtcaacgaggaggatcacttgcgtatcatctctatgcaaaatggagga
aatgttggtgaagttctcgccagactcatcaaaggactgaacctcgtcgctgccaaggct
ccattcgctcgtcatccacgtctcggatggctcaccttctgtccaaccaacttgggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCGATCCCGAGCTCAAGGGAA 211 25 496 Antisense
AAGGGAACGTACTACCCTCTGACTG 477 159 514 Antisense
ACTACCCTCTGACTGGAATGGATGA 706 101 524 Antisense
GGTGATCGCTTCTTGAAGGCTGCCA 16 501 595 Antisense
AAGGCTGCCAATGCCAACCGTTATT 11 161 610 Antisense
GGGTCAACGAGGAGGATCACTTGCG 59 497 686 Antisense
GATCACTTGCGTATCATCTCTATGC 626 421 700 Antisense
GAAATGTTGGTGAAGTTCTCGCCAG 313 361 734 Antisense
GTTCTCGCCAGACTCATCAAAGGAC 493 443 748 Antisense
TCAAAGGACTGAACCTCGTCGCTGC 202 629 764 Antisense
CTTCTGTCCAACCAACTTGGGAACA 652 219 831 Antisense
Sequence Source Affymetrix Proprietary Database