[Home] | [Total List]

[189656_at] amine oxidase like

Description F55C5.6 /REP_DB=WormBase Gene ID /WP=CE11160 /TR=Q20820 /GB=CAB01571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=amine oxidase like
Cluster 6grp_total > 43      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 51.2
(2.8)
A 		11
(-3)
A 		12.8
(-2.7)
A 		52.3
(3)
A 		41
B 70.3
(3)
A 		47.8
(0.9)
A 		5.4
(-3)
A 		18.9
(-1.8)
A 		65
C 46.3
(2.3)
A 		11.1
(-2.9)
A 		10.5
(-3)
A 		51.2
(3)
A 		41
avr 55.9
(3) 		23.3
(-1.2) 		9.6
(-3) 		40.8
(1) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 68.1
(3)
A 		35.9
(-1.8)
A 		61.2
(2)
A 		28.8
(-2.8)
A 		42
(-0.9)
A 		27.5
(-3)
A 		41
B 29.7
(-1.3)
A 		50.2
(3)
A 		38.3
(0.5)
A 		23.3
(-2.6)
A 		21.6
(-3)
A 		27.8
(-1.7)
A 		29
C 40.2
(0.4)
A 		37.5
(0.2)
A 		39.9
(0.4)
A 		5
(-3)
A 		66.8
(3)
A 		8.3
(-2.7)
A 		62
avr 46
(2.9) 		41.2
(1.8) 		46.5
(3) 		19
(-3) 		43.5
(2.3) 		21.2
(-2.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 18.6
(3)
A 		2.4
(-3)
A 		3.3
(-2.7)
A 		7.7
(-1)
A 		16
B 22.4
(3)
A 		11.8
(0)
A 		1.2
(-3)
A 		4
(-2.2)
A 		21
C 15.3
(3)
A 		3.2
(-3)
A 		3.7
(-2.8)
A 		8.6
(-0.3)
A 		12
avr 18.8
(3) 		5.8
(-1.8) 		2.7
(-3) 		6.8
(-1.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.5
(2.3)
A 		12.8
(2.5)
A 		13.3
(3)
A 		7.3
(-2.5)
A 		12.7
(2.5)
A 		6.7
(-3)
A 		7
B 10.3
(-0.7)
A 		16.7
(3)
A 		9.3
(-1.2)
A 		6.2
(-3)
A 		8.8
(-1.5)
A 		10.4
(-0.6)
A 		11
C 14.9
(1)
A 		11.5
(0.1)
A 		10.2
(-0.3)
A 		1
(-3)
A 		21.6
(3)
A 		2.8
(-2.5)
A 		21
avr 12.6
(1.9) 		13.7
(2.6) 		10.9
(0.8) 		4.8
(-3) 		14.4
(3) 		6.6
(-1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14587
Sequence Type Exemplar sequence
Representative Public ID F55C5.6 NCBI
Target Description F55C5.6 /REP_DB=WormBase Gene ID /WP=CE11160 /TR=Q20820 /GB=CAB01571.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=amine oxidase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073680(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073680 NCBI Caenorhabditis elegans F55C5.6 (F55C5.6) mRNA, complete cds. 11/11 None
SNAP00000005349 ENSEMBL cdna:SNAP chromosome:CEL140:V:12283260:12284049:1 11/11 None
GENEFINDER00000005362 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12279615:12286587:1 11/11 None
F55C5.6 ENSEMBL cdna:known chromosome:CEL140:V:12282094:12284049:1 gene:F55C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12282093-12284049(+) 100.0 100.0
Public Domain and Genome References
Gene Title amine oxidase like
Ensembl F55C5.6
Entrez Gene 186286 Entrez gene
SwissProt Q20820 EMBL-EBI
WormBase CE11160 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01571 Hypothetical protein F55C5.6 [Caenorhabditis elegans] ref|NP_506081.1| F55C5.6 [Caenorhabditis elegans] 0.0
blast CAE75438 Hypothetical protein CBG23432 [Caenorhabditis briggsae] 1.0E-141
blast CAE75438 Hypothetical protein CBG23432 [Caenorhabditis briggsae] 1.0E-135
blast CAB01571 Hypothetical protein F55C5.6 [Caenorhabditis elegans] ref|NP_506081.1| F55C5.6 [Caenorhabditis elegans] 1.0E-105
blast CAB04171 Hypothetical protein F25C8.2 [Caenorhabditis elegans] ref|NP_508034.1| AMine oXidase family member (amx-3) [Caenorhabditis elegans] 6.0E-81
blast CAE61626 Hypothetical protein CBG05552 [Caenorhabditis briggsae] 6.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002937 EMBL-EBI Amine oxidase 1.0E-22
Pfam IPR002937 EMBL-EBI Amine oxidase 3.1E-41
Pfam IPR002937 EMBL-EBI Amine oxidase 1.9E-40
Pfam IPR002937 EMBL-EBI Amine oxidase 1.0E-22
Pfam IPR002937 EMBL-EBI Amine oxidase 1.4E-33
Sequence
Target Sequence 
>C. ELEGANS:189656_AT
gtggccacttggaacgactttacgaatatccggaaaaattgaggttaatcaaaccactct
ggaagacgatttcatggttttcgagcccagttcatgggcaaagaatattctcgttgcctg
ggtggctggaaacgggccgatgaaaattgcggaactttctgacgttcaactgaatgaaat
catcagcaaacatcttacaacaaatcttaaaaatatttacaatattccgaaaattcaaaa
aatctatcgtcacaactggattactgatgagtttgctcgtggaagttactcgtatatttc
tgaaaatacatgccactcaaacacagatgatatcaagattttgagagatcctgtgctccg
caatagaaaacccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCACTTGGAACGACTTTACGA 186 487 837 Antisense
AAACCACTCTGGAAGACGATTTCAT 30 125 887 Antisense
TTCATGGTTTTCGAGCCCAGTTCAT 34 689 907 Antisense
AAAGAATATTCTCGTTGCCTGGGTG 174 121 936 Antisense
TGCCTGGGTGGCTGGAAACGGGCCG 85 541 951 Antisense
GCGGAACTTTCTGACGTTCAACTGA 37 291 985 Antisense
ATCTATCGTCACAACTGGATTACTG 129 33 1078 Antisense
GTTTGCTCGTGGAAGTTACTCGTAT 521 451 1107 Antisense
AAATACATGCCACTCAAACACAGAT 414 117 1140 Antisense
GATTTTGAGAGATCCTGTGCTCCGC 693 429 1173 Antisense
TGTGCTCCGCAATAGAAAACCCATA 441 557 1188 Antisense
Sequence Source Affymetrix Proprietary Database