[Home] | [Total List]

[189655_at] Cytochrome B561

Description F55H2.5 /REP_DB=WormBase Gene ID /WP=CE00212 /TR=SW:P34465 /GB=CAA81603.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Cytochrome B561
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 58      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 195.3
(-1.9)
P 		183.1
(-2.2)
P 		147.6
(-3)
P 		409.4
(3)
P 		262
B 123
(-2.6)
P 		180.4
(-1.2)
P 		104.9
(-3)
P 		360.5
(3)
P 		256
C 210.4
(-0.6)
P 		194.3
(-1.1)
P 		141.1
(-3)
P 		312.9
(3)
P 		172
avr 176.2
(-1.8) 		185.9
(-1.6) 		131.2
(-3) 		360.9
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 174.5
(-0.7)
P 		145.9
(-2.9)
P 		171.4
(-0.9)
P 		144.1
(-3)
P 		164.6
(-1.4)
P 		222.6
(3)
P 		79
B 180.1
(-0.2)
P 		138.3
(-3)
P 		179.5
(-0.2)
P 		165.8
(-1.2)
P 		197.1
(0.9)
P 		228.1
(3)
P 		90
C 188.2
(1.3)
P 		158.9
(-0.2)
P 		139.2
(-1.2)
P 		220.4
(3)
P 		103.5
(-3)
P 		166
(0.2)
P 		117
avr 180.9
(0.4) 		147.7
(-3) 		163.4
(-1.4) 		176.8
(0) 		155.1
(-2.2) 		205.6
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 71.1
(3)
P 		39.7
(-2.8)
P 		38.6
(-3)
P 		59.9
(0.9)
P 		33
B 39.2
(-1.3)
P 		44.5
(-0.7)
P 		24.3
(-3)
P 		76.8
(3)
P 		53
C 69.6
(3)
P 		55.9
(-1)
P 		49.2
(-3)
P 		52.8
(-1.9)
P 		20
avr 60
(2.3) 		46.7
(-0.8) 		37.4
(-3) 		63.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 32.2
(-3)
P 		51.9
(2.4)
P 		37.3
(-1.6)
P 		36.5
(-1.8)
P 		49.7
(1.8)
P 		54.2
(3)
P 		22
B 62.7
(-0.2)
P 		46
(-2.7)
P 		43.6
(-3)
P 		43.9
(-3)
P 		80.1
(2.3)
P 		85
(3)
P 		41
C 69.8
(3)
P 		48.5
(-0.5)
P 		35.4
(-2.7)
P 		44.3
(-1.2)
P 		33.5
(-3)
P 		55.6
(0.7)
P 		36
avr 54.9
(0.7) 		48.8
(-0.7) 		38.8
(-3) 		41.6
(-2.4) 		54.4
(0.6) 		64.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7690
Sequence Type Exemplar sequence
Representative Public ID F55H2.5 NCBI
Target Description F55H2.5 /REP_DB=WormBase Gene ID /WP=CE00212 /TR=SW:P34465 /GB=CAA81603.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Cytochrome B561
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066694 NCBI Caenorhabditis elegans F55H2.5 (F55H2.5) mRNA, complete cds. 11/11 None
SNAP00000007118 ENSEMBL cdna:SNAP chromosome:CEL140:III:9511371:9512681:1 11/11 None
GENEFINDER00000007126 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9511371:9512681:1 11/11 None
F55H2.5 ENSEMBL cdna:known chromosome:CEL140:III:9511371:9512681:1 gene:F55H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9511366-9512677(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cytochrome B561
Ensembl F55H2.5
Entrez Gene 186343 Entrez gene
SwissProt P34465 EMBL-EBI
WormBase CE00212 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249523_AT cytochrome B561 family protein at
CANINE:1587261_AT similar to cytochrome b reductase 1 cfa
CANINE_2:CFAAFFX.19626.1.S1_S_AT similar to cytochrome b reductase 1 cfa
DROSOPHILA_2:1635256_S_AT dm
DROSGENOME1:154778_AT dm
HG-U133B:222453_AT cytochrome b reductase 1 hs
HG-U133_PLUS_2:222453_AT cytochrome b reductase 1 hs
HU35KSUBA:N29207_AT cytochrome b reductase 1 hs
HU35KSUBA:D62965_AT cytochrome b reductase 1 hs
HU35KSUBB:RC_W42866_AT cytochrome b reductase 1 hs
HU35KSUBB:RC_N67047_AT cytochrome b reductase 1 hs
HU35KSUBB:RC_H56673_AT cytochrome b reductase 1 hs
HG-U133A:217889_S_AT cytochrome b reductase 1 hs
HG-U133_PLUS_2:217889_S_AT cytochrome b reductase 1 hs
HG-U133A_2:217889_S_AT cytochrome b reductase 1 hs
U133_X3P:G13376256_3P_A_AT cytochrome b reductase 1 hs
U133_X3P:G12052907_3P_AT cytochrome b reductase 1 hs
HG-U95B:43590_F_AT cytochrome b reductase 1 hs
HG-U95B:43591_R_AT cytochrome b reductase 1 hs
HG-U95B:50955_AT cytochrome b reductase 1 hs
HG-U95B:59044_AT cytochrome b reductase 1 hs
HG-U95C:65852_AT cytochrome b reductase 1 hs
HG-U133_PLUS_2:232459_AT Cytochrome b reductase 1 hs
HG-U133B:232459_AT Cytochrome b reductase 1 hs
U133_X3P:HS.221941.0.S1_3P_AT Cytochrome b reductase 1 hs
HG-U95E:71860_AT Cytochrome b reductase 1 hs
MU11KSUBA:C79507_RC_F_AT cytochrome b reductase 1 mm
MG-U74BV2:107775_AT cytochrome b reductase 1 mm
MG-U74CV2:140417_AT cytochrome b reductase 1 mm
MOE430A:1425040_AT cytochrome b reductase 1 mm
MOUSE430A_2:1425040_AT cytochrome b reductase 1 mm
MOUSE430_2:1425040_AT cytochrome b reductase 1 mm
MOE430B:1460604_AT Cytochrome b reductase 1, mRNA (cDNA clone MGC:41559 IMAGE:1243966) mm
MOUSE430_2:1460604_AT Cytochrome b reductase 1, mRNA (cDNA clone MGC:41559 IMAGE:1243966) mm
MG-U74BV2:164115_AT Cytochrome b reductase 1, mRNA (cDNA clone MGC:41559 IMAGE:1243966) mm
RAE230A:1377369_AT cytochrome b reductase 1 (predicted) rn
RAT230_2:1377369_AT cytochrome b reductase 1 (predicted) rn
RG-U34A:AB007601MRNA_AT Cytochrome b reductase 1 (predicted) rn
RAE230A:1376344_AT Cytochrome b reductase 1 (predicted) rn
RAT230_2:1376344_AT Cytochrome b reductase 1 (predicted) rn
RG-U34B:RC_AI010267_AT Cytochrome b reductase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA81603 Hypothetical protein F55H2.5 [Caenorhabditis elegans] ref|NP_499095.1| F55H2.5 [Caenorhabditis elegans] sp|P34465|CY561_CAEEL Putative cytochrome b561 (Cytochrome b-561) 1.0E-153
blast CAE65194 Hypothetical protein CBG10069 [Caenorhabditis briggsae] 1.0E-143
blast EAA11195 ENSANGP00000021225 [Anopheles gambiae str. PEST] ref|XP_315519.2| ENSANGP00000021225 [Anopheles gambiae str. PEST] 6.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR004877 EMBL-EBI Cytochrome b561 8.6E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499095.1 6 21-43,63-85,98-116,141-163,176-198,218-240
F55H2.5 6 21-43,63-85,98-116,141-163,176-198,218-240
SNAP00000007118 6 21-43,63-85,98-116,141-163,176-198,218-240
GENEFINDER00000007126 6 21-43,63-85,98-116,141-163,176-198,218-240
Sequence
Target Sequence 
>C. ELEGANS:189655_AT
gaattcaactatcatccgacttttatgattatgggaatggttttcctttttggagaggct
cttctcgtttatcgtgtattccgtaatgaaagaaagaaattcagtaaaactcttcatgtt
attcttcattcgtgtgttcttgtcttcatgcttatggcacttaaagcagtttttgactac
cataaccttcacaaggatccatctggaaatccagcaccaattgtcaatttggtttcttta
cattcatggattggcctatccgttgtcattctctactttgcacaatacatcgtcggattc
atcacctacttcttcccgggaatgccaattccgattcgtcaactcgttatgccattccat
caaatgttcggtgtgctcatcttcatttttgtctcgattactgtagccatgggaatttcg
gaaagagcagcatggaagcatacttgctggactaaagaaggtcaaatgtgtgctcaacaa
gcaacatcttcattcgtcggagtcttcactttcctatacactgtctgtgttctccttctt
gtattgaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCAACTATCATCCGACTTTTA 493 323 187 Antisense
GGCTCTTCTCGTTTATCGTGTATTC 30 539 243 Antisense
TTCATTCGTGTGTTCTTGTCTTCAT 468 689 311 Antisense
TGGATTGGCCTATCCGTTGTCATTC 267 549 433 Antisense
GTCATTCTCTACTTTGCACAATACA 673 467 451 Antisense
ATACATCGTCGGATTCATCACCTAC 136 25 471 Antisense
GCCAATTCCGATTCGTCAACTCGTT 672 277 510 Antisense
TCAACTCGTTATGCCATTCCATCAA 61 631 525 Antisense
AAATGTTCGGTGTGCTCATCTTCAT 192 121 548 Antisense
AACATCTTCATTCGTCGGAGTCTTC 502 137 669 Antisense
GTGTTCTCCTTCTTGTATTGAATCC 620 485 713 Antisense
Sequence Source Affymetrix Proprietary Database