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[189654_s_at] ATPase

Description F56H1.4 /REP_DB=WormBase Gene ID /WP=CE17915 /GEN=rpt-5 /TR=O76371 /GB=AAC19196.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 77      6grp_total > 97      4grp_total > 48      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 801
1 2 3 4 range
A 1231.9
(-2.7)
P 		1588.7
(0.4)
P 		1888.9
(3)
P 		1194.3
(-3)
P 		695
B 1230.6
(-3)
P 		1752.4
(1.1)
P 		1995.4
(3)
P 		1339.5
(-2.1)
P 		765
C 1317
(-3)
P 		1624.1
(-0.3)
P 		1988.4
(3)
P 		1461.6
(-1.7)
P 		671
avr 1259.8
(-3) 		1655.1
(0.4) 		1957.6
(3) 		1331.8
(-2.4) 		698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 1167.9
(-3)
P 		1296.2
(-1.2)
P 		1197.6
(-2.6)
P 		1275.9
(-1.5)
P 		1362.2
(-0.2)
P 		1587.8
(3)
P 		420
B 1184.4
(-2.7)
P 		1158.5
(-3)
P 		1173.6
(-2.8)
P 		1388
(-0.4)
P 		1441.6
(0.2)
P 		1686.9
(3)
P 		528
C 1295.9
(-1.9)
P 		1221.3
(-3)
P 		1383.6
(-0.5)
P 		1285
(-2)
P 		1607.8
(2.9)
P 		1612.7
(3)
P 		391
avr 1216.1
(-3) 		1225.3
(-2.9) 		1251.6
(-2.5) 		1316.3
(-1.5) 		1470.5
(0.7) 		1629.1
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 448.5
(2.1)
P 		344.9
(0.2)
P 		493.8
(3)
P 		174.8
(-3)
P 		319
B 392.4
(0.6)
P 		432.8
(2)
P 		462.4
(3)
P 		285.4
(-3)
P 		177
C 436
(-0.5)
P 		466.9
(-0)
P 		693
(3)
P 		246.4
(-3)
P 		447
avr 425.6
(0.6) 		414.9
(0.4) 		549.7
(3) 		235.5
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 215.3
(-3)
P 		461
(3)
P 		260.8
(-1.9)
P 		323.6
(-0.4)
P 		411
(1.8)
P 		386.6
(1.2)
P 		246
B 412.1
(-0.8)
P 		385.6
(-1.2)
P 		285
(-3)
P 		367.6
(-1.6)
P 		585.7
(2.2)
P 		629.1
(3)
P 		344
C 480.3
(1.7)
P 		372.7
(-0.6)
P 		352.1
(-1)
P 		258.4
(-3)
P 		520.3
(2.6)
P 		539.9
(3)
P 		282
avr 369.2
(-1.1) 		406.4
(-0.1) 		299.3
(-3) 		316.5
(-2.5) 		505.7
(2.6) 		518.5
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189654_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2376
Sequence Type Exemplar sequence
Representative Public ID F56H1.4 NCBI
Target Description F56H1.4 /REP_DB=WormBase Gene ID /WP=CE17915 /GEN=rpt-5 /TR=O76371 /GB=AAC19196.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059271 NCBI Caenorhabditis elegans F56H1.4 (ATPase) mRNA, complete cds. 11/11 None
SNAP00000038417 ENSEMBL cdna:SNAP chromosome:CEL140:I:5750187:5751690:-1 11/11 None
GENEFINDER00000038422 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5750187:5751690:-1 11/11 None
F56H1.4.2 ENSEMBL cdna:known chromosome:CEL140:I:5750004:5751709:-1 gene:F56H1.4 11/11 None
F56H1.4.1 ENSEMBL cdna:known chromosome:CEL140:I:5750004:5751707:-1 gene:F56H1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5750186-5751690(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol rpt-5
Ensembl F56H1.4
Entrez Gene 172238 Entrez gene
SwissProt O76371 EMBL-EBI
WormBase CE17915 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16628_AT 26S proteasome AAA-ATPase subunit (RPT5a) at
ATH1-121501:259114_AT 26S proteasome AAA-ATPase subunit (RPT5a) at
CANINE:1584587_X_AT similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) cfa
CANINE_2:CFA.3960.1.A1_AT similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) cfa
CANINE_2:CFA.3960.1.A1_S_AT similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) cfa
CANINE_2:CFAAFFX.13781.1.S1_AT similar to 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1) (Proteasome subunit P50) cfa
DROSOPHILA_2:1629676_AT Tat-binding protein-1 dm
DROSGENOME1:152417_AT Tat-binding protein-1 dm
CHICKEN:GGA.4649.1.S1_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 gga
HG-U133_PLUS_2:201267_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HG-U133A_2:201267_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HG-FOCUS:201267_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HG-U133A:201267_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HG-U95AV2:592_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HC-G110:592_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
HUGENEFL:M34079_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
U133_X3P:HS.250758.0.S1_3P_S_AT proteasome (prosome, macropain) 26S subunit, ATPase, 3 hs
MU11KSUBA:AA409481_RC_F_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MU11KSUBB:MSA.42725.0_F_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MU11KSUBB:MSA.3708.0_S_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MG-U74AV2:100225_F_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MG-U74AV2:93734_I_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MG-U74AV2:93735_F_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MOE430A:1416282_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MOUSE430A_2:1416282_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MOUSE430_2:1416282_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 mm
MG-U74CV2:168979_I_AT Proteasome (prosome, macropain) 26S subunit, ATPase 3, mRNA (cDNA clone MGC:12017 IMAGE:3603053) mm
MU19KSUBC:TC37150_AT Proteasome (prosome, macropain) 26S subunit, ATPase 3, mRNA (cDNA clone MGC:12017 IMAGE:3603053) mm
RG-U34A:U77918_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 rn
RAE230A:1387120_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 rn
RAT230_2:1387120_AT proteasome (prosome, macropain) 26S subunit, ATPase 3 rn
YEAST_2:1776109_AT One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30163 protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19196 Proteasome regulatory particle, atpase-like protein 5 [Caenorhabditis elegans] ref|NP_491672.1| F56H1.4 [Caenorhabditis elegans] 0.0
blast CAE67391 Hypothetical protein CBG12876 [Caenorhabditis briggsae] 0.0
blast EAA06390 ENSANGP00000007334 [Anopheles gambiae str. PEST] ref|XP_310465.1| ENSANGP00000007334 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 6.7E-87
Sequence
Target Sequence 
>C. ELEGANS:189654_S_AT
tgcggttgctgcccaaactaaatcaacattcttgaagctcgcaggcccacaacttgttca
gatgttcattggagatggagccaagcttgttcgtgatgcttttgctcttgctaaggaaaa
ggctccagctattattttcattgatgagttggatgccattggtacgaagcgattcgattc
agagaaagctggagatcgtgaagtgcaacgtaccatgttggaacttcttaatcaacttga
tggcttccaaccaaatgatgatatcaaggtcattgctgcaacgaaccgtatcgatgtgct
cgatcccgctcttcttcgttctggtcgtctcgatcgtaaaattgagcttccccatccgaa
cgaggatgcccgtgccagaatcatgcagattcattccaggaagatgaatgtcaacaagga
tgtaaactttgaagaactggcccgctgtaccgatgacttcaacggagcacaatgcaaagc
ggtttgtgttgaagctggaatgattgctcttcgacgagatgctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGTTGCTGCCCAAACTAAATCA 657 575 699 Antisense
TCAACATTCTTGAAGCTCGCAGGCC 116 631 721 Antisense
CAGGCCCACAACTTGTTCAGATGTT 604 209 740 Antisense
AGCTTGTTCGTGATGCTTTTGCTCT 146 79 782 Antisense
AAGGCTCCAGCTATTATTTTCATTG 433 161 817 Antisense
GGATGCCATTGGTACGAAGCGATTC 276 513 849 Antisense
GAACCGTATCGATGTGCTCGATCCC 96 347 981 Antisense
ATCGTAAAATTGAGCTTCCCCATCC 699 33 1031 Antisense
ACTTTGAAGAACTGGCCCGCTGTAC 337 101 1124 Antisense
CCCGCTGTACCGATGACTTCAACGG 68 261 1139 Antisense
GATTGCTCTTCGACGAGATGCTACT 621 433 1200 Antisense
Sequence Source Affymetrix Proprietary Database