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[189652_at] carrier protein C2

Description T09F3.2 /REP_DB=WormBase Gene ID /WP=CE02342 /TR=Q27244 /GB=CAA88869.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=carrier protein C2
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 59      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 87      6grp_total > 39      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 789
1 2 3 4 range
A 1250.2
(-1.4)
P 		1062.9
(-3)
P 		1268.7
(-1.2)
P 		1745.9
(3)
P 		683
B 1169.7
(-3)
P 		1228.9
(-2.5)
P 		1437.2
(-0.6)
P 		1852
(3)
P 		682
C 1296.1
(-1.3)
P 		1272.7
(-1.7)
P 		1199
(-3)
P 		1533.1
(3)
P 		334
avr 1238.7
(-2.4) 		1188.2
(-3) 		1301.6
(-1.7) 		1710.3
(3) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 1094.9
(0.4)
P 		1298.4
(2.9)
P 		820.1
(-3)
P 		958.2
(-1.3)
P 		1307
(3)
P 		1267.4
(2.5)
P 		487
B 1099.4
(-0.5)
P 		1263.8
(2)
P 		930.4
(-3)
P 		1075.6
(-0.8)
P 		1333
(3)
P 		1187.6
(0.8)
P 		403
C 1099.4
(-0.1)
P 		1246.3
(3)
P 		957.7
(-3)
P 		1103.4
(0)
P 		1157.6
(1.2)
P 		1226.3
(2.6)
P 		289
avr 1097.9
(0.2) 		1269.5
(3) 		902.7
(-3) 		1045.7
(-0.7) 		1265.9
(2.9) 		1227.1
(2.3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 455.2
(3)
P 		230.7
(-3)
P 		331.7
(-0.3)
P 		255.6
(-2.3)
P 		225
B 373
(1.6)
P 		303.5
(-3)
P 		333
(-1.1)
P 		394.7
(3)
P 		91
C 429
(3)
P 		365.9
(0.8)
P 		417.9
(2.6)
P 		258.5
(-3)
P 		171
avr 419.1
(3) 		300
(-3) 		360.9
(0.1) 		302.9
(-2.9) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 201.8
(-2.5)
P 		461.8
(3)
P 		178.6
(-3)
P 		243
(-1.6)
P 		394.4
(1.6)
P 		308.6
(-0.2)
P 		283
B 382.6
(-0)
P 		420.7
(0.7)
P 		225.9
(-3)
P 		284.9
(-1.9)
P 		541.6
(3)
P 		442.8
(1.1)
P 		316
C 407.5
(2.9)
P 		380.3
(2)
P 		243.7
(-2.3)
P 		221.9
(-3)
P 		374.6
(1.9)
P 		410.5
(3)
P 		189
avr 330.6
(0.1) 		420.9
(2.6) 		216.1
(-3) 		249.9
(-2.1) 		436.9
(3) 		387.3
(1.7) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3067
Sequence Type Exemplar sequence
Representative Public ID T09F3.2 NCBI
Target Description T09F3.2 /REP_DB=WormBase Gene ID /WP=CE02342 /TR=Q27244 /GB=CAA88869.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=carrier protein C2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063835 NCBI Caenorhabditis elegans T09F3.2 (T09F3.2) mRNA, complete cds. 11/11 A 
SNAP00000009657 ENSEMBL cdna:SNAP chromosome:CEL140:II:10391271:10393005:1 11/11 None
GENEFINDER00000009663 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10391271:10393005:1 11/11 None
T09F3.2 ENSEMBL cdna:known chromosome:CEL140:II:10391064:10393531:1 gene:T09F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10391267-10393002(+) 100.0 100.0
Public Domain and Genome References
Gene Title carrier protein C2
Ensembl T09F3.2
Entrez Gene 174602 Entrez gene
SwissProt Q27244 EMBL-EBI
WormBase CE02342 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625651_AT dm
DROSGENOME1:141322_AT dm
MG-U74BV2:106089_AT solute carrier family 25, member 36 mm
MG-U74AV2:160683_AT solute carrier family 25, member 36 mm
MOE430A:1419657_A_AT solute carrier family 25, member 36 mm
MOUSE430A_2:1419657_A_AT solute carrier family 25, member 36 mm
MOUSE430_2:1419657_A_AT solute carrier family 25, member 36 mm
MOE430A:1419656_AT solute carrier family 25, member 36 mm
MOUSE430A_2:1419656_AT solute carrier family 25, member 36 mm
MOUSE430_2:1419656_AT solute carrier family 25, member 36 mm
MOE430B:1438520_AT solute carrier family 25, member 36 mm
MOUSE430_2:1438520_AT solute carrier family 25, member 36 mm
MOUSE430_2:1447297_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
MOE430B:1447297_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
MU19KSUBA:TC21310_AT Solute carrier family 25, member 36 (Slc25a36), mRNA mm
YEAST_2:1778943_AT Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6839 mitochondrial transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88869 Hypothetical protein T09F3.2 [Caenorhabditis elegans] ref|NP_496236.1| T09F3.2 [Caenorhabditis elegans] emb|CAA53722.1| carrier protein (c2) [Caenorhabditis elegans] 1.0E-180
blast CAE59385 Hypothetical protein CBG02742 [Caenorhabditis briggsae] 1.0E-159
blast EAA05757 ENSANGP00000015067 [Anopheles gambiae str. PEST] ref|XP_310002.2| ENSANGP00000015067 [Anopheles gambiae str. PEST] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-27
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 8.1E-30
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:189652_AT
ccgtctatttctacacatactctacatcaaaacgattttggaatgagtcggaagttctaa
ttccaaattctgcgattgtgcacatggtgtctgctggttcggctggattcgtggcggcat
cggctgttaatcctatatggctcgtgaaaacacgccttcagcttcaccaaggacacattg
gaatatggcaaatgattaagagagtttatcatcgagaaggattcaaaggattctacaagg
gtgtgacagcttcctacgcgggtgtctccgaaacgatgattcagttttgtatatacgagt
atttccgtggtgtgttgctcagtgatgccaacgaaatggacaagagaaaaatggacttcc
taaactttatggttgccggtggttctgcaaagtttattgcttgtgttgtcgcttatccgc
atgaagtggtccgtacacgtcttcgtgaagaaacaggaaagtcacgtggattcttcaaga
cactttatcagctgtacaaagaaggatatccggcaatgtatcgtggtttgtcagtgcagc
tgatgcgtactgtaccaaacactgctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCTATTTCTACACATACTCTAC 447 265 551 Antisense
TTGTGCACATGGTGTCTGCTGGTTC 310 709 626 Antisense
GTGAAAACACGCCTTCAGCTTCACC 334 481 694 Antisense
ACAAGGGTGTGACAGCTTCCTACGC 510 111 785 Antisense
CTACGCGGGTGTCTCCGAAACGATG 320 195 804 Antisense
AGTATTTCCGTGGTGTGTTGCTCAG 197 63 848 Antisense
ACTTTATGGTTGCCGGTGGTTCTGC 676 101 914 Antisense
TATTGCTTGTGTTGTCGCTTATCCG 453 665 945 Antisense
TGAAGTGGTCCGTACACGTCTTCGT 279 573 972 Antisense
GTATCGTGGTTTGTCAGTGCAGCTG 272 455 1068 Antisense
GCGTACTGTACCAAACACTGCTATC 661 291 1095 Antisense
Sequence Source Affymetrix Proprietary Database