[Home] | [Total List]

[189650_at] sugar transporter

Description K09C4.4 /REP_DB=WormBase Gene ID /WP=CE04732 /TR=Q21382 /GB=AAA83624.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_total > 71      4grp_total > 44      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 71
(3)
A 		64.3
(1.6)
A 		47.3
(-1.9)
A 		41.9
(-3)
A 		29
B 41.3
(-3)
A 		46.5
(-2)
A 		43.9
(-2.5)
A 		71.6
(3)
A 		30
C 64.4
(0)
A 		88.2
(3)
A 		60.8
(-0.4)
A 		40
(-3)
A 		48
avr 58.9
(0.2) 		66.3
(3) 		50.7
(-3) 		51.2
(-2.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 43.2
(0.8)
A 		54.9
(2)
A 		64.5
(3)
A 		59.8
(2.5)
A 		56.8
(2.2)
A 		5.1
(-3)
A 		59
B 23.4
(-1)
A 		39
(0.9)
A 		29.8
(-0.2)
A 		55.8
(3)
A 		54.5
(2.8)
A 		6.8
(-3)
A 		49
C 8.2
(-3)
A 		53.9
(0.6)
A 		81.8
(2.8)
A 		83.8
(3)
A 		47.3
(0.1)
A 		28.2
(-1.4)
A 		76
avr 24.9
(-1.7) 		49.3
(1.1) 		58.7
(2.1) 		66.5
(3) 		52.9
(1.5) 		13.4
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25.9
(3)
A 		14
(-0.6)
A 		12.4
(-1.1)
A 		6.1
(-3)
A 		20
B 13.2
(0.5)
A 		11.5
(-1.5)
A 		10.2
(-3)
A 		15.3
(3)
A 		5
C 21.3
(1.7)
A 		25.4
(3)
A 		21.2
(1.7)
A 		6.7
(-3)
A 		19
avr 20.1
(3) 		17
(1.3) 		14.6
(-0.1) 		9.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8
(-0.8)
A 		19.5
(3)
A 		14
(1.2)
A 		15.2
(1.6)
A 		17.1
(2.2)
A 		1.2
(-3)
A 		18
B 8.1
(-1.3)
A 		13
(0.2)
A 		7.2
(-1.6)
A 		14.8
(0.8)
A 		22.1
(3)
A 		2.5
(-3)
A 		20
C 3
(-3)
A 		16.5
(1.6)
A 		20.8
(3)
A 		16.9
(1.7)
A 		15.3
(1.1)
A 		9.4
(-0.8)
A 		18
avr 6.4
(-2.1) 		16.3
(2.2) 		14
(1.2) 		15.6
(1.9) 		18.2
(3) 		4.4
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18537
Sequence Type Exemplar sequence
Representative Public ID K09C4.4 NCBI
Target Description K09C4.4 /REP_DB=WormBase Gene ID /WP=CE04732 /TR=Q21382 /GB=AAA83624.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076165 NCBI Caenorhabditis elegans K09C4.4 (K09C4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004467 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3289591:3292322:1 11/11 None
SNAP00000004460 ENSEMBL cdna:SNAP chromosome:CEL140:X:3289760:3290645:1 10/11 None
K09C4.4 ENSEMBL cdna:known chromosome:CEL140:X:3289474:3290928:1 gene:K09C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3289474-3290929(+) 97.43 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl K09C4.4
Entrez Gene 187194 Entrez gene
SwissProt Q21382 EMBL-EBI
WormBase CE04732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83624 Hypothetical protein K09C4.4 [Caenorhabditis elegans] ref|NP_508566.1| K09C4.4 [Caenorhabditis elegans] 1.0E-143
blast AAA83624 Hypothetical protein K09C4.4 [Caenorhabditis elegans] ref|NP_508566.1| K09C4.4 [Caenorhabditis elegans] 1.0E-117
blast CAE58070 Hypothetical protein CBG01149 [Caenorhabditis briggsae] 1.0E-111
blast AAA83623 Hypothetical protein K09C4.5 [Caenorhabditis elegans] ref|NP_508565.2| K09C4.5 [Caenorhabditis elegans] 1.0E-109
blast CAE58070 Hypothetical protein CBG01149 [Caenorhabditis briggsae] 3.0E-83
blast AAA83624 Hypothetical protein K09C4.4 [Caenorhabditis elegans] ref|NP_508566.1| K09C4.4 [Caenorhabditis elegans] 1.0E-75
blast CAE68407 Hypothetical protein CBG14184 [Caenorhabditis briggsae] 8.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.5E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508566.1 3 117-139,143-165,233-255
K09C4.4 3 117-139,143-165,233-255
GENEFINDER00000004467 8 21-43,77-99,106-123,194-216,228-250,265-287,294-316,352-374
SNAP00000004460 4 9-31,46-63,70-92,102-121
Sequence
Target Sequence 
>C. ELEGANS:189650_AT
atcagcgctttgtcaggtgttatccgcgtactctcaatctgctgaatttttcataatgag
taaactattcgaaggcctgcaacatcctctgggcacatttcttacggcattgttcatagc
cgaatgtgcaccagataagaatcgaggattcgcttgtacatcgctggtagttttagttgg
aattgtgagaatgatcatgttgcccatagcgtcaccagctgtgttaggaaaagcggacac
ttggtttgtgttcccactggccgcactgataagcagttttttggttttaatatgggtatg
ccggttacctgagtcaccgaaatggctggtctgccaaaacagaatagaggaggctaaacg
gtccattgaatattaccatgggaacgattcctcggagaatttcaataacgttttgctatc
tattgtgaaagaaaagaacctaacaattgagtcgcatatatctttaagagaagtcttaca
aaatgacacattacgagaggggttcaaagtgctgttttcatttttattttttatattaat
cgattctgataatgcattgtcagtttacactgtcctacttcacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCGCTTTGTCAGGTGTTATCC 326 29 201 Antisense
CGCGTACTCTCAATCTGCTGAATTT 664 255 225 Antisense
TATTCGAAGGCCTGCAACATCCTCT 354 663 266 Antisense
GGGCACATTTCTTACGGCATTGTTC 561 493 291 Antisense
TCGAGGATTCGCTTGTACATCGCTG 87 603 342 Antisense
GAATGATCATGTTGCCCATAGCGTC 276 331 389 Antisense
CCCATAGCGTCACCAGCTGTGTTAG 306 259 403 Antisense
AGCGGACACTTGGTTTGTGTTCCCA 179 81 432 Antisense
CCCACTGGCCGCACTGATAAGCAGT 382 257 453 Antisense
GGTATGCCGGTTACCTGAGTCACCG 108 503 495 Antisense
AGTTTACACTGTCCTACTTCACAAA 229 63 762 Antisense
Sequence Source Affymetrix Proprietary Database