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[189649_s_at] sugar transporter

Description C10E2.6 /REP_DB=WormBase Gene ID /WP=CE08065 /TR=O17328 /GB=AAB71245.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 41      6grp_total > 35      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 739
1 2 3 4 range
A 937
(-0.9)
P 		1414.6
(3)
P 		1196.6
(1.2)
P 		675.7
(-3)
P 		739
B 980.5
(-3)
P 		1147.6
(-0.2)
P 		1336.7
(3)
P 		978.1
(-3)
P 		359
C 833.5
(-1.9)
P 		1170.1
(1.4)
P 		1335
(3)
P 		721.7
(-3)
P 		613
avr 917
(-1.5) 		1244.1
(2.5) 		1289.4
(3) 		791.8
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 639.9
(-1)
P 		964.6
(3)
P 		596
(-1.5)
P 		476
(-3)
P 		631.5
(-1.1)
P 		756
(0.4)
P 		489
B 744.9
(1.8)
P 		804.4
(3)
P 		771.2
(2.3)
P 		555
(-2.2)
P 		515.7
(-3)
P 		591.2
(-1.4)
P 		289
C 873.8
(3)
P 		790
(1.7)
P 		727.1
(0.7)
P 		577
(-1.6)
P 		663.8
(-0.2)
P 		484.8
(-3)
P 		389
avr 752.9
(1.1) 		853
(3) 		698.1
(0.1) 		536
(-3) 		603.7
(-1.7) 		610.7
(-1.6) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 341.2
(3)
P 		307.1
(2.2)
P 		312.8
(2.3)
P 		98.9
(-3)
P 		242
B 312.7
(3)
P 		283.4
(1.3)
P 		309.7
(2.8)
P 		208.4
(-3)
P 		104
C 275.9
(-0.3)
P 		336.4
(0.7)
P 		465.3
(3)
P 		121.7
(-3)
P 		344
avr 309.9
(1.6) 		309
(1.5) 		362.6
(3) 		143
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 118
(-3)
P 		343.1
(3)
P 		129.8
(-2.7)
P 		120.7
(-2.9)
P 		190.6
(-1.1)
P 		184.1
(-1.2)
P 		225
B 259.2
(2.6)
P 		267.7
(3)
P 		187.3
(-1)
P 		147
(-3)
P 		209.5
(0.1)
P 		220.5
(0.7)
P 		121
C 323.9
(3)
P 		241
(0.6)
P 		185.1
(-1)
P 		116
(-3)
P 		214.8
(-0.1)
P 		162.3
(-1.7)
P 		208
avr 233.7
(1.1) 		283.9
(3) 		167.4
(-1.5) 		127.9
(-3) 		205
(-0) 		189
(-0.7) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17901
Sequence Type Exemplar sequence
Representative Public ID C10E2.6 NCBI
Target Description C10E2.6 /REP_DB=WormBase Gene ID /WP=CE08065 /TR=O17328 /GB=AAB71245.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078304 NCBI Caenorhabditis elegans C10E2.6 (C10E2.6) mRNA, complete cds. 11/11 None
SNAP00000026948 ENSEMBL cdna:SNAP chromosome:CEL140:X:16767876:16769978:-1 11/11 None
GENEFINDER00000026953 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16767876:16770408:-1 11/11 None
C10E2.6.1 ENSEMBL cdna:known chromosome:CEL140:X:16767093:16770411:-1 gene:C10E2.6 11/11 None
C10E2.6.2 ENSEMBL cdna:known chromosome:CEL140:X:16767093:16770413:-1 gene:C10E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16767623-16770408(-) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl C10E2.6
Entrez Gene 181724 Entrez gene
SwissProt O17328 EMBL-EBI
WormBase CE29573 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601348_AT similar to solute carrier family 16, member 4 cfa
CANINE:1600585_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.1.S1_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.2.S1_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFA.14399.2.S1_S_AT similar to solute carrier family 16, member 4 cfa
CANINE_2:CFAAFFX.30267.1.S1_AT similar to solute carrier family 16, member 4 cfa
DROSOPHILA_2:1626727_AT Monocarboxylate transporter 1 dm
DROSGENOME1:144005_AT Monocarboxylate transporter 1 dm
CHICKEN:GGAAFFX.25903.3.S1_S_AT similar to Solute carrier family 16 (monocarboxylic acid transporters), member 4 gga
HG-U133A_2:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133A:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133_PLUS_2:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-FOCUS:205234_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HU35KSUBB:RC_H01059_I_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
U133_X3P:G4759113_3P_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95AV2:39260_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:68559_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:68561_G_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133_PLUS_2:228455_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U133B:228455_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
U133_X3P:HS.126465.0.A1_3P_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95E:76424_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
HG-U95D:81350_AT Solute carrier family 16 (monocarboxylic acid transporters), member 4 hs
MOE430A:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MOUSE430_2:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MOUSE430A_2:1426082_A_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
MG-U74BV2:115451_AT solute carrier family 16 (monocarboxylic acid transporters), member 4 mm
RAE230B:1385164_AT Similar to solute carrier family 16 (monocarboxylic acid transporters), member 4 rn
RAT230_2:1385164_AT Similar to solute carrier family 16 (monocarboxylic acid transporters), member 4 rn
Protein Similarities
Method ID Description E-Value
blast AAB71245 Hypothetical protein C10E2.6 [Caenorhabditis elegans] ref|NP_510705.1| C10E2.6 [Caenorhabditis elegans] 0.0
blast CAE69894 Hypothetical protein CBG16244 [Caenorhabditis briggsae] 0.0
blast NP_495464 T02G5.12 [Caenorhabditis elegans] gb|AAA82406.1| Hypothetical protein T02G5.12 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510705.1 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
C10E2.6.1 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
C10E2.6.2 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
SNAP00000026948 10 2-24,28-50,57-79,89-111,118-140,331-353,408-430,440-462,467-489,499-521
GENEFINDER00000026953 11 20-42,55-77,87-109,116-138,151-173,180-202,391-413,468-490,500-522,527-549,559-581
Sequence
Target Sequence 
>C. ELEGANS:189649_S_AT
aactttcttgctctttgcgatttcaaaccttctcacatctgttggattcaactccccact
gtacttcctcccacttcacgctaccaaaattggactcgagcctatccaaggatcaaaggt
tctttccgcatttggagtctccaacaccgttggccgtatcatcttcggagttgttgccga
tcacaagctcccacttccaggaggcatcggaaatgataccgctcgtaatcgtctctggat
gtataacatttctttgaccatctgcggacttctcactgtattttgctaccaattcaacgg
attcatcccacttgccacctactctgcacttttcggattctctattgcctcgtacatctg
cctcacgtctgtcatcctcgtcgaccttcttggacttgacaagctcaccaacgccttcgg
actgcttcttctctggcaaggagtcggaacagtgttcggaccacctgtgtcgggatactt
ggctgatatgaccggcaactataccctttcattcgtcttctgcggagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTCTTGCTCTTTGCGATTTCA 310 139 1182 Antisense
GATTTCAAACCTTCTCACATCTGTT 204 429 1200 Antisense
AGGTTCTTTCCGCATTTGGAGTCTC 3 57 1298 Antisense
GGAGTTGTTGCCGATCACAAGCTCC 520 517 1348 Antisense
AAATGATACCGCTCGTAATCGTCTC 265 119 1392 Antisense
CGGACTTCTCACTGTATTTTGCTAC 345 243 1446 Antisense
CACTTTTCGGATTCTCTATTGCCTC 165 197 1508 Antisense
TCGTCGACCTTCTTGGACTTGACAA 99 605 1559 Antisense
GAACAGTGTTCGGACCACCTGTGTC 680 351 1628 Antisense
CACCTGTGTCGGGATACTTGGCTGA 476 201 1643 Antisense
TTTCATTCGTCTTCTGCGGAGTCAA 15 671 1688 Antisense
Sequence Source Affymetrix Proprietary Database