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[189647_at] aldehyde reductase

Description F53F1.3 /REP_DB=WormBase Gene ID /WP=CE10936 /TR=P91998 /GB=CAB03128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 51      6grp_total > 34      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 658.6
(1.1)
P 		826.7
(3)
P 		805.8
(2.8)
P 		290.6
(-3)
P 		536
B 612
(-0.5)
P 		751.1
(0.6)
P 		1045.1
(3)
P 		298.6
(-3)
P 		747
C 663.2
(0.4)
P 		550.3
(-0.6)
P 		953.7
(3)
P 		290.5
(-3)
P 		663
avr 644.6
(0.3) 		709.4
(0.9) 		934.9
(3) 		293.2
(-3) 		642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 745.3
(3)
P 		720.1
(2.6)
P 		736.2
(2.9)
P 		572.6
(0.2)
P 		370.9
(-3)
P 		511.7
(-0.7)
P 		374
B 729.2
(3)
P 		635
(1.2)
P 		632.2
(1.1)
P 		502.4
(-1.4)
P 		418.2
(-3)
P 		463
(-2.1)
P 		311
C 663.4
(2.5)
P 		688.6
(3)
P 		628.8
(1.9)
P 		553.3
(0.5)
P 		363.7
(-3)
P 		508.1
(-0.3)
P 		325
avr 712.6
(3) 		681.2
(2.4) 		665.7
(2.1) 		542.8
(-0.1) 		384.3
(-3) 		494.3
(-1) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 239.8
(3)
P 		179.5
(1.2)
P 		210.7
(2.1)
P 		42.5
(-3)
P 		197
B 195.2
(1.4)
P 		185.5
(1.1)
P 		242.2
(3)
P 		63.6
(-3)
P 		179
C 219.5
(0.6)
P 		158.2
(-0.7)
P 		332.4
(3)
P 		49
(-3)
P 		283
avr 218.2
(1.8) 		174.4
(0.5) 		261.8
(3) 		51.7
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 137.4
(-1.9)
P 		256.1
(3)
P 		160.3
(-1)
P 		145.2
(-1.6)
P 		111.9
(-3)
P 		124.6
(-2.5)
P 		144
B 253.7
(3)
P 		211.4
(0.9)
P 		153.5
(-2)
P 		133.1
(-3)
P 		169.9
(-1.2)
P 		172.7
(-1)
P 		121
C 245.9
(3)
P 		210.1
(1.4)
P 		160
(-0.8)
P 		111.3
(-3)
P 		117.7
(-2.7)
P 		170.1
(-0.4)
P 		135
avr 212.3
(2.2) 		225.9
(3) 		157.9
(-1.3) 		129.9
(-3) 		133.2
(-2.8) 		155.8
(-1.4) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14642
Sequence Type Exemplar sequence
Representative Public ID F53F1.3 NCBI
Target Description F53F1.3 /REP_DB=WormBase Gene ID /WP=CE10936 /TR=P91998 /GB=CAB03128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073922 NCBI Caenorhabditis elegans F53F1.3 (F53F1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038189 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13410834:13412371:1 11/11 None
F53F1.3 ENSEMBL cdna:known chromosome:CEL140:V:13410834:13412412:1 gene:F53F1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038179 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13410833-13412371(+) 100.0 100.0
Public Domain and Genome References
Gene Title aldehyde reductase
Ensembl F53F1.3
Entrez Gene 186169 Entrez gene
SwissProt P91998 EMBL-EBI
WormBase CE10936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03128 Hypothetical protein F53F1.3 [Caenorhabditis elegans] ref|NP_506323.1| F53F1.3 [Caenorhabditis elegans] 1.0E-157
blast CAE62604 Hypothetical protein CBG06720 [Caenorhabditis briggsae] 1.0E-113
blast CAE62605 Hypothetical protein CBG06721 [Caenorhabditis briggsae] 8.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 2.0E-114
Sequence
Target Sequence 
>C. ELEGANS:189647_AT
aaaatgcatcccaataccgtagaaaatgtgaaaaagttggtggatgaatcgttgtcattg
ttgaaaactagctacatcgatatgtatctcatccattacccgaagtcatttgactatgga
gaccaggatccgatgaacaagactctacgaattgccacgtggaatgatctctgggagtgt
aagaatgcaggaaagattcgatctgttggagtttccagttttgaaattcgccatctggaa
gagcttaaagatctcggaaagaactttcctccatgttgcaatcaagttgaatatcatcca
cacttcacgcgtgaagaactcaaaaattattgcaaatcagaaggaatcttttttcaagca
ttttcctcacttgccagacacaatgagaccttgttgtcctcggaaattattacaagattg
gcagagaagtatcatgttccaaaaacaacggttctcttgtcttgggcgacgagtcaaaaa
gttggaatcattccaaagtccaccaatccggaaagactcgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGCATCCCAATACCGTAGAAA 520 133 238 Antisense
GATATGTATCTCATCCATTACCCGA 583 425 316 Antisense
AAGACTCTACGAATTGCCACGTGGA 71 153 376 Antisense
AAGATTCGATCTGTTGGAGTTTCCA 443 153 430 Antisense
AAGAACTTTCCTCCATGTTGCAATC 296 151 496 Antisense
TATCATCCACACTTCACGCGTGAAG 25 661 529 Antisense
GAATCTTTTTTCAAGCATTTTCCTC 197 329 581 Antisense
TTTCCTCACTTGCCAGACACAATGA 124 669 599 Antisense
ATGAGACCTTGTTGTCCTCGGAAAT 83 47 620 Antisense
TTCTCTTGTCTTGGGCGACGAGTCA 554 669 689 Antisense
CCACCAATCCGGAAAGACTCGCTCA 648 273 737 Antisense
Sequence Source Affymetrix Proprietary Database