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[189646_at] sugar transporter

Description K09C4.5 /REP_DB=WormBase Gene ID /WP=CE04733 /TR=Q21381 /GB=AAA83623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_high1_10_10 > 71      6grp_total > 72      4grp_total > 56      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 70.9
(-1.5)
P 		148.6
(0.8)
P 		218.4
(3)
M 		23.7
(-3)
A 		195
B 59.3
(-1.4)
P 		114.4
(0.5)
A 		183.9
(3)
P 		13.8
(-3)
A 		170
C 70.4
(-1.1)
A 		140.2
(1)
A 		204.2
(3)
P 		7.9
(-3)
A 		196
avr 66.9
(-1.3) 		134.4
(0.8) 		202.2
(3) 		15.1
(-3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 97
(-2.7)
A 		200.7
(-1.6)
P 		389.7
(0.2)
P 		665.7
(3)
P 		474.6
(1.1)
P 		65.6
(-3)
M 		600
B 96.9
(-2.8)
P 		211.6
(-1.5)
P 		514.9
(1.8)
P 		621.4
(3)
P 		444.9
(1.1)
P 		77.9
(-3)
P 		544
C 68.7
(-3)
A 		211.8
(-1.8)
P 		528.5
(0.9)
P 		770.9
(3)
P 		442.4
(0.2)
P 		126.5
(-2.5)
P 		702
avr 87.5
(-3) 		208
(-1.8) 		477.7
(0.9) 		686
(3) 		454
(0.7) 		90
(-3) 		599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 25.8
(-0.5)
P 		32.3
(0.2)
P 		57.1
(3)
M 		3.5
(-3)
A 		54
B 18.9
(-0.6)
P 		28.3
(0.8)
A 		42.6
(3)
P 		2.9
(-3)
A 		40
C 23.3
(-1.1)
A 		40.3
(0.3)
A 		71.2
(3)
P 		1.3
(-3)
A 		70
avr 22.7
(-0.8) 		33.6
(0.4) 		57
(3) 		2.6
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 17.9
(-2.9)
A 		71.4
(-0.8)
P 		84.9
(-0.3)
P 		168.8
(3)
P 		143.2
(2)
P 		16
(-3)
M 		153
B 33.7
(-2.8)
P 		70.4
(-1.4)
P 		125
(0.8)
P 		164.6
(2.4)
P 		180.8
(3)
P 		29.1
(-3)
P 		152
C 25.5
(-3)
A 		64.6
(-1.2)
P 		134.5
(2.1)
P 		155
(3)
P 		143.2
(2.5)
P 		42.3
(-2.2)
P 		130
avr 25.7
(-3) 		68.8
(-1.1) 		114.8
(0.9) 		162.8
(3) 		155.7
(2.7) 		29.1
(-2.9) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18429
Sequence Type Exemplar sequence
Representative Public ID K09C4.5 NCBI
Target Description K09C4.5 /REP_DB=WormBase Gene ID /WP=CE04733 /TR=Q21381 /GB=AAA83623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076164 NCBI Caenorhabditis elegans K09C4.5 (K09C4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000004469 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3282717:3285630:1 11/11 None
K09C4.5 ENSEMBL cdna:known chromosome:CEL140:X:3282614:3285689:1 gene:K09C4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004459 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3282663-3285631(+) 100.0 100.0
Public Domain and Genome References
Gene Title sugar transporter
Ensembl K09C4.5
Entrez Gene 187195 Entrez gene
SwissProt Q21381 EMBL-EBI
WormBase CE37126 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83623 Hypothetical protein K09C4.5 [Caenorhabditis elegans] ref|NP_508565.2| K09C4.5 [Caenorhabditis elegans] 0.0
blast CAE68406 Hypothetical protein CBG14183 [Caenorhabditis briggsae] 0.0
blast CAE68406 Hypothetical protein CBG14183 [Caenorhabditis briggsae] 1.0E-175
blast CAE68407 Hypothetical protein CBG14184 [Caenorhabditis briggsae] 1.0E-143
blast CAE68407 Hypothetical protein CBG14184 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508565.2 12 9-31,58-80,93-115,120-142,151-173,183-205,262-284,299-321,328-350,370-392,399-421,425-442
K09C4.5 12 9-31,58-80,93-115,120-142,151-173,183-205,262-284,299-321,328-350,370-392,399-421,425-442
GENEFINDER00000004469 9 40-62,75-97,135-157,162-179,211-233,288-310,320-342,391-413,417-434
Sequence
Target Sequence 
>C. ELEGANS:189646_AT
aacatacatcatcgaccacttgggaaggcgaccagttatgttgattgcaggaataattgt
atattcgaaaacttggttgatgttatcaactcaatttataatttattttgttggtccaag
tgttctgaccaaatggttatatattggtgtagaatgtctatctgaatcatcattagccac
tggagtcacttctctcggaattcttttcatctccgaacttttccctccatcagcacgaac
ctgtgttgcacaagcactcattctagtcaccatgacaatcaatttacccattatctctat
tttcccaatagtttactcgttctttgggcccggtttttttattattcatgttttcagtca
gttcttctttggagcctatctttatcggcatatgcctgaaactcgtggaagagctgtcta
tgacatcattgaatcgttggaccaagaagtggcgtcaaggacagcttcatttctggaaga
aacaacacccttggtcagaaaaagatcgagcacactggcctacaaaagaaacagcatact
caacacttctcgcacacgggcactaacctttgatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATACATCATCGACCACTTGGGA 49 139 1089 Antisense
GAATCATCATTAGCCACTGGAGTCA 351 327 1252 Antisense
TGGAGTCACTTCTCTCGGAATTCTT 207 549 1269 Antisense
CCATCAGCACGAACCTGTGTTGCAC 359 271 1315 Antisense
ACAAGCACTCATTCTAGTCACCATG 574 113 1338 Antisense
CAATTTACCCATTATCTCTATTTTC 494 179 1368 Antisense
TTTCAGTCAGTTCTTCTTTGGAGCC 345 671 1440 Antisense
GAGCCTATCTTTATCGGCATATGCC 293 385 1460 Antisense
GTGGCGTCAAGGACAGCTTCATTTC 128 493 1537 Antisense
AAAGATCGAGCACACTGGCCTACAA 108 123 1589 Antisense
CACACGGGCACTAACCTTTGATCAT 509 195 1641 Antisense
Sequence Source Affymetrix Proprietary Database