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[189645_s_at] ATPase

Description F39G3.7 /REP_DB=WormBase Gene ID /WP=CE10124 /GEN=prx-6 /TR=O16270 /GB=AAB65332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 66      4grp_total > 0      6grp_highest_sub > Da      6grp_cgc > 47      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 147.6
(-2.8)
P 		137.1
(-3)
P 		194.9
(-1.8)
P 		430.9
(3)
P 		294
B 167.9
(-1.1)
P 		76.3
(-3)
P 		170.4
(-1.1)
P 		371.2
(3)
P 		295
C 169
(-2.3)
P 		121
(-3)
P 		213
(-1.7)
P 		535.8
(3)
P 		415
avr 161.5
(-2.1) 		111.5
(-3) 		192.8
(-1.5) 		446
(3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 191.3
(-2.2)
P 		174.4
(-3)
P 		230.6
(-0.4)
P 		190.6
(-2.2)
P 		174.3
(-3)
P 		304
(3)
P 		130
B 178
(-3)
P 		237.9
(0)
P 		213.7
(-1.2)
P 		220.2
(-0.9)
P 		209.4
(-1.4)
P 		296.1
(3)
P 		118
C 178.8
(-1.7)
P 		205.2
(-0.8)
P 		228.9
(0.1)
P 		211.2
(-0.5)
P 		145.2
(-3)
P 		305.4
(3)
P 		160
avr 182.7
(-2.7) 		205.8
(-1.6) 		224.4
(-0.7) 		207.3
(-1.5) 		176.3
(-3) 		301.8
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 53.7
(1.3)
P 		29.8
(-3)
P 		50.9
(0.8)
P 		63.1
(3)
P 		33
B 53.5
(0.5)
P 		18.8
(-3)
P 		39.5
(-0.9)
P 		79.1
(3)
P 		60
C 55.9
(-0.7)
P 		34.8
(-3)
P 		74.2
(1.3)
P 		90.3
(3)
P 		56
avr 54.4
(0.2) 		27.8
(-3) 		54.9
(0.3) 		77.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 35.3
(-3)
P 		62
(1.1)
P 		50.2
(-0.7)
P 		48.3
(-1)
P 		52.6
(-0.3)
P 		74
(3)
P 		39
B 61.9
(-2)
P 		79.2
(-0.2)
P 		51.9
(-3)
P 		58.3
(-2.3)
P 		85.1
(0.4)
P 		110.4
(3)
P 		59
C 66.3
(-0.6)
P 		62.6
(-1)
P 		58.3
(-1.4)
P 		42.5
(-3)
P 		47
(-2.5)
P 		102.2
(3)
P 		60
avr 54.5
(-2.4) 		67.9
(-0.6) 		53.5
(-2.5) 		49.7
(-3) 		61.6
(-1.4) 		95.5
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189645_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15369
Sequence Type Exemplar sequence
Representative Public ID F39G3.7 NCBI
Target Description F39G3.7 /REP_DB=WormBase Gene ID /WP=CE10124 /GEN=prx-6 /TR=O16270 /GB=AAB65332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071867 NCBI Caenorhabditis elegans F39G3.7 (ATPase) mRNA, complete cds. 11/11 None
SNAP00000029878 ENSEMBL cdna:SNAP chromosome:CEL140:V:4712324:4720626:-1 11/11 None
GENEFINDER00000029887 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4714931:4719853:-1 11/11 None
F39G3.7 ENSEMBL cdna:known chromosome:CEL140:V:4715199:4719926:-1 gene:F39G3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4715238-4719853(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol prx-6
Ensembl F39G3.7
Entrez Gene 266912 Entrez gene
SwissProt O16270 EMBL-EBI
WormBase CE10124 Wormbase
Functional Annotations
Ortholog
ID Title Organism
YEAST_2:1770417_AT Peroxisomal membrane AAA-family ATPase peroxin required for peroxisome assembly, contains two 230 amino acid ATP-binding AAA cassettes, interacts with Pex1p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65332 Peroxisome assembly factor protein 6 [Caenorhabditis elegans] ref|NP_504268.1| F39G3.7 [Caenorhabditis elegans] dbj|BAA76440.1| Pex6p homolog [Caenorhabditis elegans] dbj|BAA33544.1| PEX6 [Caenorhabditis elegans] 0.0
blast CAE64177 Hypothetical protein CBG08802 [Caenorhabditis briggsae] 0.0
blast EAA00892 ENSANGP00000018134 [Anopheles gambiae str. PEST] ref|XP_321486.2| ENSANGP00000018134 [Anopheles gambiae str. PEST] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.6E-78
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.6E-78
Sequence
Target Sequence 
>C. ELEGANS:189645_S_AT
gagaacctgcggaaagtcttcgaaagagctaaacaagcttctccgtgcgtaattttcttt
gacgaaatcgacagtttggctccgaatcgcggaaggaatggagattctggaggggtcatt
gacagaattgtatctcaactgctcgcggagctagacaaacttcataactccccactaact
aaagtttttgtaatgggagctacgaatcgtccagatttgctggataattctctaatgact
cctggaagatttgataagctggttgaggtgaagcctggtgaagatgtagagtcgaagact
aagattttggaagcagtctcaagaaaaatgagattcgaagaggatgttgatttgagagaa
attgcaagtaaagttgacgaaaaaatgtccggtgcacaactattctccataatttctaac
gctggaatggctgcaattgtggaaacgattcaaagtattgaggacgggaagactgaaaat
caatcaatacgggttgctcagagacatcttttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACCTGCGGAAAGTCTTCGAAA 567 391 1627 Antisense
GAGCTAAACAAGCTTCTCCGTGCGT 134 387 1652 Antisense
TTCTCCGTGCGTAATTTTCTTTGAC 65 693 1665 Antisense
AATCGACAGTTTGGCTCCGAATCGC 131 169 1692 Antisense
GCTCGCGGAGCTAGACAAACTTCAT 229 299 1767 Antisense
CTTCATAACTCCCCACTAACTAAAG 194 221 1786 Antisense
GCTACGAATCGTCCAGATTTGCTGG 80 303 1825 Antisense
GATAATTCTCTAATGACTCCTGGAA 252 423 1849 Antisense
AAATGTCCGGTGCACAACTATTCTC 455 119 2009 Antisense
ACTATTCTCCATAATTTCTAACGCT 227 103 2025 Antisense
GGTTGCTCAGAGACATCTTTTGGAA 513 507 2118 Antisense
Sequence Source Affymetrix Proprietary Database