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[189644_at] protein kinase

Description C03B1.5 /REP_DB=WormBase Gene ID /WP=CE03907 /TR=SW:Q11112 /GB=AAA81740.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 30      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 58.1
(-0)
A 		33.1
(-1.5)
A 		7.3
(-3)
A 		109.5
(3)
P 		102
B 31.1
(-3)
A 		48.6
(-1.1)
A 		53.2
(-0.5)
A 		85.2
(3)
A 		54
C 11.6
(-3)
A 		86.5
(2.7)
A 		30.5
(-1.6)
A 		89.9
(3)
P 		78
avr 33.6
(-2.7) 		56.1
(-0.6) 		30.3
(-3) 		94.9
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 35.1
(-2.2)
A 		52.8
(-0.3)
A 		83.7
(3)
P 		42.3
(-1.4)
A 		45.2
(-1.1)
P 		27.5
(-3)
A 		56
B 66.3
(3)
A 		51.4
(1.5)
A 		7
(-3)
A 		32.3
(-0.4)
A 		54.1
(1.8)
P 		47.5
(1.1)
M 		59
C 35.5
(-1.3)
A 		103.7
(2.8)
P 		54.9
(-0.2)
A 		107.3
(3)
A 		35.1
(-1.3)
A 		7.6
(-3)
A 		100
avr 45.6
(-0.4) 		69.3
(3) 		48.5
(0) 		60.6
(1.8) 		44.8
(-0.5) 		27.5
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.2
(3)
A 		7.2
(-1.4)
A 		1.9
(-3)
A 		16
(1.4)
P 		19
B 9.9
(-3)
A 		12
(-1.5)
A 		12.3
(-1.2)
A 		18.1
(3)
A 		8
C 3.8
(-3)
A 		24.9
(3)
A 		10.6
(-1.1)
A 		15.2
(0.2)
P 		21
avr 11.6
(-0.6) 		14.7
(1.7) 		8.3
(-3) 		16.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.5
(-3)
A 		18.8
(3)
A 		18.2
(2.7)
P 		10.7
(-1)
A 		13.7
(0.5)
P 		6.7
(-2.9)
A 		12
B 23.1
(3)
A 		17.1
(1.3)
A 		1.7
(-3)
A 		8.6
(-1.1)
A 		22
(2.7)
P 		17.7
(1.5)
M 		21
C 13.1
(-0.8)
A 		31.6
(3)
P 		14
(-0.6)
A 		21.6
(0.9)
A 		11.4
(-1.2)
A 		2.6
(-3)
A 		29
avr 14.2
(-0.7) 		22.5
(3) 		11.3
(-2) 		13.6
(-1) 		15.7
(-0) 		9
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16984
Sequence Type Exemplar sequence
Representative Public ID C03B1.5 NCBI
Target Description C03B1.5 /REP_DB=WormBase Gene ID /WP=CE03907 /TR=SW:Q11112 /GB=AAA81740.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076664(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076664 NCBI Caenorhabditis elegans C03B1.5 (C03B1.5) mRNA, complete cds. 9/11 None
GENEFINDER00000009791 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6355604:6357380:1 9/11 None
SNAP00000009783 ENSEMBL cdna:SNAP chromosome:CEL140:X:6356379:6357380:1 9/11 None
C03B1.5 ENSEMBL cdna:known chromosome:CEL140:X:6355541:6357645:1 gene:C03B1.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6356378-6357380(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl C03B1.5
Entrez Gene 182148 Entrez gene
SwissProt Q11112 EMBL-EBI
WormBase CE37605 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81740 Hypothetical protein C03B1.5 [Caenorhabditis elegans] ref|NP_509065.2| C03B1.5 [Caenorhabditis elegans] sp|Q11112|YX05_CAEEL Putative tyrosine-protein kinase C03B1.5 in chromosome X 1.0E-174
blast AAA81740 Hypothetical protein C03B1.5 [Caenorhabditis elegans] ref|NP_509065.2| C03B1.5 [Caenorhabditis elegans] sp|Q11112|YX05_CAEEL Putative tyrosine-protein kinase C03B1.5 in chromosome X 1.0E-156
blast AAA81740 Hypothetical protein C03B1.5 [Caenorhabditis elegans] ref|NP_509065.2| C03B1.5 [Caenorhabditis elegans] sp|Q11112|YX05_CAEEL Putative tyrosine-protein kinase C03B1.5 in chromosome X 8.0E-62
blast AAQ02578 serine/threonine kinase 24 [synthetic construct] 3.0E-18
blast CAG05929 unnamed protein product [Tetraodon nigroviridis] 4.0E-18
blast XP_656956 protein kinase, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL51574.1| protein kinase, putative [Entamoeba histolytica HM-1:IMSS] 2.0E-16
blast XP_761690 hypothetical protein UM05543.1 [Ustilago maydis 521] gb|EAK86303.1| hypothetical protein UM05543.1 [Ustilago maydis 521] 3.0E-15
Protein Families
Method ID Description E-Value
hanks 1.1.17 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); DG1 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.8E-36
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-31
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-9
Sequence
Target Sequence 
>C. ELEGANS:189644_AT
ggaactccagggtttgtaagtgttgttgtatttttatttgaaatgtggaagaacatcgtt
ttcatattccatcaaaattttgacaagagaacaaattttaaaacatttgtaaaatattat
actatagctccagaaatcatcaatttgcaaggttacgacggaaaagcagatctatggggt
ctaggtattctgtcactttttcttctcaagggagagaatccgttcaaaaaatgtactcag
tttgatctagaatcgtataaagtctcaatatccgagagtttctacccagactacagcaat
tactcaaccccgcttcaggaatttatgtcatctttgaaagattacaacccagaatttcgg
tcatcagcgcttcacgcctcatcacaaacatatcttaagaccagttgctcacaaagtgaa
attttgaattattataaacggctgagaagaacacgtgggatggatctgccgtggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTCCAGGGTTTGTAAGTGTTG 92 529 265 Antisense
GAACATCGTTTTCATATTCCATCAA 557 351 315 Antisense
TCATCAATTTGCAAGGTTACGACGG 14 619 401 Antisense
GGGTCTAGGTATTCTGTCACTTTTT 381 497 441 Antisense
TATCCGAGAGTTTCTACCCAGACTA 624 655 533 Antisense
CAGACTACAGCAATTACTCAACCCC 662 203 551 Antisense
CTCAACCCCGCTTCAGGAATTTATG 326 227 567 Antisense
CCCAGAATTTCGGTCATCAGCGCTT 171 257 612 Antisense
ACGCCTCATCACAAACATATCTTAA 429 91 638 Antisense
ATATCTTAAGACCAGTTGCTCACAA 131 21 654 Antisense
CACGTGGGATGGATCTGCCGTGGCC 632 197 716 Antisense
Sequence Source Affymetrix Proprietary Database