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[189642_at] acyltransfersase

Description B0238.10 /REP_DB=WormBase Gene ID /WP=CE07700 /TR=O16486 /GB=AAB65989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acyltransfersase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 04      4grp_high_8_8 > 28      6grp_highest_nonorm > 30      6grp_total > 08      4grp_total > 35      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 760.2
(-3)
P 		1125
(3)
P 		766.5
(-2.9)
P 		1067.7
(2.1)
P 		365
B 864.9
(-0.5)
P 		1054.4
(3)
P 		733.1
(-3)
P 		885.2
(-0.2)
P 		321
C 782.5
(-3)
P 		1039.6
(3)
P 		784.8
(-2.9)
P 		870.7
(-0.9)
P 		257
avr 802.5
(-2.2) 		1073
(3) 		761.5
(-3) 		941.2
(0.5) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 912
1 2 3 4 5 6 range
A 1458.8
(3)
P 		744.9
(-1.7)
P 		976
(-0.2)
P 		819.6
(-1.2)
P 		687.1
(-2.1)
P 		546.9
(-3)
P 		912
B 1198.9
(3)
P 		751.3
(-1.5)
P 		870.7
(-0.3)
P 		765.8
(-1.3)
P 		597.4
(-3)
P 		683.8
(-2.1)
P 		602
C 1122.7
(3)
P 		799
(-0.7)
P 		1000.4
(1.6)
P 		766.9
(-1.1)
P 		662.4
(-2.2)
P 		595.6
(-3)
P 		527
avr 1260.1
(3) 		765.1
(-1.6) 		949
(0.1) 		784.1
(-1.4) 		649
(-2.6) 		608.8
(-3) 		651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 276.8
(3)
P 		244.2
(1.4)
P 		200.4
(-0.8)
P 		156.3
(-3)
P 		121
B 275.8
(3)
P 		260.4
(2.1)
P 		169.9
(-3)
P 		188.6
(-1.9)
P 		106
C 259
(1.4)
P 		298.9
(3)
P 		273.5
(2)
P 		146.8
(-3)
P 		152
avr 270.5
(3) 		267.8
(2.8) 		214.6
(-0.1) 		163.9
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 268.9
(3)
P 		264.9
(2.8)
P 		212.6
(0.5)
P 		207.9
(0.3)
P 		207.3
(0.3)
P 		133.2
(-3)
P 		136
B 417.2
(3)
P 		250.1
(-1.7)
P 		211.4
(-2.8)
P 		202.8
(-3)
P 		242.7
(-1.9)
P 		255
(-1.5)
P 		214
C 416.1
(3)
P 		243.8
(-0.9)
P 		254.6
(-0.7)
P 		154.2
(-3)
P 		214.3
(-1.6)
P 		199.4
(-2)
P 		262
avr 367.4
(3) 		252.9
(-0.8) 		226.2
(-1.7) 		188.3
(-3) 		221.4
(-1.9) 		195.9
(-2.7) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11608
Sequence Type Exemplar sequence
Representative Public ID B0238.10 NCBI
Target Description B0238.10 /REP_DB=WormBase Gene ID /WP=CE07700 /TR=O16486 /GB=AAB65989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acyltransfersase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072010 NCBI Caenorhabditis elegans B0238.10 (acyltransfersase) mRNA, complete cds. 11/11 None
SNAP00000038876 ENSEMBL cdna:SNAP chromosome:CEL140:V:5273914:5275193:1 11/11 None
GENEFINDER00000038883 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5273914:5275193:1 11/11 None
B0238.10 ENSEMBL cdna:known chromosome:CEL140:V:5273886:5275356:1 gene:B0238.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5273913-5275193(+) 100.0 100.0
Public Domain and Genome References
Gene Title acyltransfersase
Ensembl B0238.10
Entrez Gene 178916 Entrez gene
SwissProt O16486 EMBL-EBI
WormBase CE07700 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631458_AT dm
DROSGENOME1:147979_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65989 Hypothetical protein B0238.10 [Caenorhabditis elegans] ref|NP_504411.1| B0238.10 [Caenorhabditis elegans] 1.0E-160
blast CAE62642 Hypothetical protein CBG06776 [Caenorhabditis briggsae] 1.0E-141
blast XP_283206 PREDICTED: hypothetical protein LOC70646 [Mus musculus] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 4.4E-25
Sequence
Target Sequence 
>C. ELEGANS:189642_AT
atggccacactgtcagcacatgatcagccaggatgaggccccacgcaacgatgaacttgc
cagcccgaatattcgaattgttgcctacaaagatgaatcacagatcaacgatattatgcg
cttgatcaccaaggatctcagtgagccctactccatctacacctacagatatttcctcca
caattggccagaatattgtttcctggcttacgaccagaccaacaacacctacatcggagc
tgttttgtgcaagttggaacttgatatgtatggacggtgcaagggttatcttgccatgtt
ggctgtcgacgagtcgtgccgtcgtctcggaatcggaactcgtcttgttcgtcgtgcttt
ggacgctatgcaatcgaaaggatgtgatgagattgttcttgaaacagaagtttccaataa
gaatgctcagcggctttacagtaatctcggatttattcgtcagaaaagacttctaaaata
ttacctgaacggaggtgacgctttccgtctgaaactgatcttcacttcccgtcgtgtacg
ctctctgaacaatcaagaaaactatcagccgcggtgtcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCACACTGTCAGCACATGATC 75 51 225 Antisense
TGAACTTGCCAGCCCGAATATTCGA 704 573 276 Antisense
CTACACCTACAGATATTTCCTCCAC 406 225 381 Antisense
GAATATTGTTTCCTGGCTTACGACC 530 325 415 Antisense
GACCAACAACACCTACATCGGAGCT 439 383 441 Antisense
TGCCGTCGTCTCGGAATCGGAACTC 438 583 541 Antisense
AATCGGAACTCGTCTTGTTCGTCGT 422 169 555 Antisense
TGCTCAGCGGCTTTACAGTAATCTC 326 581 648 Antisense
GAACGGAGGTGACGCTTTCCGTCTG 550 345 711 Antisense
TCTGAAACTGATCTTCACTTCCCGT 196 607 732 Antisense
GAAAACTATCAGCCGCGGTGTCGGG 203 353 781 Antisense
Sequence Source Affymetrix Proprietary Database