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[189641_at] aldehyde reductase

Description F53F1.2 /REP_DB=WormBase Gene ID /WP=CE10934 /TR=P91997 /GB=CAB03127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 03      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 23      6grp_total > 25      4grp_total > 48      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1135
1 2 3 4 range
A 2028.1
(-1.3)
P 		2152.9
(-0.6)
P 		2821.8
(3)
P 		1718.3
(-3)
P 		1104
B 1687
(-3)
P 		2439
(3)
P 		2423.4
(2.9)
P 		2329.9
(2.1)
P 		752
C 1889.2
(-3)
P 		2330.5
(0.5)
P 		2650.2
(3)
P 		2147.9
(-1)
P 		761
avr 1868.1
(-3) 		2307.5
(0.5) 		2631.8
(3) 		2065.4
(-1.4) 		764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1196
1 2 3 4 5 6 range
A 2605
(2.7)
P 		2656.9
(3)
P 		2110.9
(-0.5)
P 		2002.6
(-1.2)
P 		1817.6
(-2.4)
P 		1717.8
(-3)
P 		939
B 2905.3
(3)
P 		2581.9
(1.4)
P 		2172.5
(-0.7)
P 		2126
(-0.9)
P 		1709.7
(-3)
P 		2245.3
(-0.3)
P 		1196
C 2431.2
(1.3)
P 		2671.3
(3)
P 		2309.9
(0.5)
P 		2012.3
(-1.6)
P 		1805
(-3)
P 		1981.5
(-1.8)
P 		866
avr 2647.2
(3) 		2636.7
(2.9) 		2197.8
(-0.1) 		2047
(-1.1) 		1777.4
(-3) 		1981.5
(-1.6) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 738.4
(3)
P 		467.3
(-0.3)
P 		737.7
(3)
P 		251.5
(-3)
P 		487
B 538
(-0.6)
P 		602.4
(3)
P 		561.6
(0.7)
P 		496.5
(-3)
P 		106
C 625.4
(-0.2)
P 		670
(0.3)
P 		923.7
(3)
P 		362.2
(-3)
P 		562
avr 633.9
(1.3) 		579.9
(0.4) 		741
(3) 		370.1
(-3) 		371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 480.2
(-2.3)
P 		944.9
(3)
P 		459.7
(-2.5)
P 		507.9
(-2)
P 		548.5
(-1.5)
P 		418.2
(-3)
P 		527
B 1010.9
(3)
P 		859.4
(1.1)
P 		527.5
(-3)
P 		563.1
(-2.6)
P 		694.6
(-0.9)
P 		837.2
(0.8)
P 		483
C 901.1
(3)
P 		815.1
(2)
P 		587.9
(-0.8)
P 		404.7
(-3)
P 		584.1
(-0.8)
P 		663.3
(0.1)
P 		496
avr 797.4
(1.8) 		873.1
(3) 		525
(-2.5) 		491.9
(-3) 		609.1
(-1.2) 		639.6
(-0.7) 		381
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14530
Sequence Type Exemplar sequence
Representative Public ID F53F1.2 NCBI
Target Description F53F1.2 /REP_DB=WormBase Gene ID /WP=CE10934 /TR=P91997 /GB=CAB03127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=aldehyde reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073921 NCBI Caenorhabditis elegans F53F1.2 (F53F1.2) mRNA, complete cds. 11/11 None
SNAP00000038178 ENSEMBL cdna:SNAP chromosome:CEL140:V:13409516:13410644:1 11/11 None
GENEFINDER00000038194 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13409516:13410644:1 11/11 None
F53F1.2 ENSEMBL cdna:known chromosome:CEL140:V:13409508:13410777:1 gene:F53F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13409515-13410644(+) 100.0 100.0
Public Domain and Genome References
Gene Title aldehyde reductase
Ensembl F53F1.2
Entrez Gene 179821 Entrez gene
SwissProt P91997 EMBL-EBI
WormBase CE10934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03127 Hypothetical protein F53F1.2 [Caenorhabditis elegans] ref|NP_506322.1| F53F1.2 [Caenorhabditis elegans] 1.0E-171
blast CAE62605 Hypothetical protein CBG06721 [Caenorhabditis briggsae] 1.0E-138
blast CAE62604 Hypothetical protein CBG06720 [Caenorhabditis briggsae] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 2.3E-121
Sequence
Target Sequence 
>C. ELEGANS:189641_AT
gagaagcttgccgtggatttgtcgaagaatctctacaatctcttcaaaccgactatatcg
atatgtatcttgttcactatccaaaaccgaatgactctgacaatgatgatgtgaataacg
cggaataccggaaaattgcatatgaagtgctggaagaggctaaagctgctggcaaagttc
gttccattggagtttcaaactatgaaattgtgcatttggaagagctcaagacatacgcca
aggtgccgccatgtgctaaccaactggagtatcatccacattttgcaagaattccacttc
agaagtactgcaaggaaaaaaacattttcttccaggctttctcctcacttgcaagacacg
aaccaaagttaattgaagatccagtcgtcgttgaattagctaagaagcacaatacatcag
ttcctcttgtacttctcgcgtgggctctccgccagaatgttggtatcgtaccgaagtcgg
tgaccccatcaagaatcgtagaaaacttcaaagtaatcgatattgctctgactccagaag
atattcaatcgttaacagctcttgatcgtgggcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCTTGCCGTGGATTTGTCGA 546 391 296 Antisense
GTATCTTGTTCACTATCCAAAACCG 605 453 360 Antisense
TCAAGACATACGCCAAGGTGCCGCC 363 629 521 Antisense
CCGCCATGTGCTAACCAACTGGAGT 669 261 541 Antisense
GGAGTATCATCCACATTTTGCAAGA 663 517 561 Antisense
TTTCTCCTCACTTGCAAGACACGAA 175 669 633 Antisense
GATCCAGTCGTCGTTGAATTAGCTA 484 415 673 Antisense
ATACATCAGTTCCTCTTGTACTTCT 130 25 707 Antisense
GGCTCTCCGCCAGAATGTTGGTATC 211 539 738 Antisense
GAAGTCGGTGACCCCATCAAGAATC 304 335 768 Antisense
GTTAACAGCTCTTGATCGTGGGCAG 31 447 846 Antisense
Sequence Source Affymetrix Proprietary Database