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[189635_at] guanyltransferase

Description C42C1.5 /REP_DB=WormBase Gene ID /WP=CE16911 /TR=O44970 /GB=AAB97547.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=guanyltransferase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 75      6grp_total > 80      4grp_total > 33      6grp_highest_sub > 04      6grp_cgc > 95      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 490.8
(-3)
P 		1005
(3)
P 		872.2
(1.4)
P 		1006.3
(3)
P 		516
B 482.3
(-3)
P 		816.4
(0.7)
P 		996.5
(2.7)
P 		1018.9
(3)
P 		537
C 480.4
(-3)
P 		825.4
(0.7)
P 		1035.5
(3)
P 		944.2
(2)
P 		555
avr 484.5
(-3) 		882.3
(1.7) 		968.1
(2.7) 		989.8
(3) 		505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 1000.6
(2.8)
P 		736.3
(-3)
P 		891.2
(0.4)
P 		1009.5
(3)
P 		857.1
(-0.3)
P 		773.8
(-2.2)
P 		273
B 884.5
(-3)
P 		926.9
(-2.2)
P 		936.4
(-2)
P 		1208.4
(3)
P 		970.7
(-1.4)
P 		1034.5
(-0.2)
P 		324
C 907.1
(0.7)
P 		802.1
(-1.4)
P 		718.1
(-3)
P 		1025.2
(3)
P 		831.1
(-0.8)
P 		849.9
(-0.4)
P 		307
avr 930.7
(-0.5) 		821.8
(-3) 		848.6
(-2.4) 		1081
(3) 		886.3
(-1.5) 		886.1
(-1.5) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 178.7
(-0.7)
P 		218.2
(2.3)
P 		228
(3)
P 		147.3
(-3)
P 		81
B 153.8
(-3)
P 		201.6
(0.7)
P 		230.9
(3)
P 		217.1
(1.9)
P 		77
C 159
(-3)
P 		237.3
(-0.7)
P 		360.9
(3)
P 		159.2
(-3)
P 		202
avr 163.8
(-3) 		219
(0) 		273.3
(3) 		174.5
(-2.4) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 184.5
(-3)
P 		261.9
(3)
P 		194.1
(-2.3)
P 		256
(2.5)
P 		258.6
(2.7)
P 		188.4
(-2.7)
P 		77
B 307.7
(-0.1)
P 		308.5
(-0.1)
P 		227.4
(-3)
P 		320.1
(0.3)
P 		394.4
(3)
P 		385.8
(2.7)
P 		167
C 336.2
(3)
P 		244.7
(-0.6)
P 		182.8
(-3)
P 		206.2
(-2.1)
P 		268.9
(0.4)
P 		284.5
(1)
P 		153
avr 276.1
(1.2) 		271.7
(1) 		201.4
(-3) 		260.8
(0.4) 		307.3
(3) 		286.2
(1.8) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9541
Sequence Type Exemplar sequence
Representative Public ID C42C1.5 NCBI
Target Description C42C1.5 /REP_DB=WormBase Gene ID /WP=CE16911 /TR=O44970 /GB=AAB97547.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=guanyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069932 NCBI Caenorhabditis elegans C42C1.5 (guanyltransferase) mRNA, complete cds. 11/11 None
SNAP00000027936 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12276406:12278002:-1 11/11 None
GENEFINDER00000027960 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12276406:12278002:-1 11/11 None
C42C1.5 ENSEMBL cdna:known chromosome:CEL140:IV:12276088:12278204:-1 gene:C42C1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12276411-12278030(-) 99.82 99.82
Public Domain and Genome References
Gene Title guanyltransferase
Gene Symbol tag-335
Ensembl C42C1.5
Entrez Gene 183400 Entrez gene
SwissProt O44970 EMBL-EBI
WormBase CE16911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16627_S_AT GDP-mannose pyrophosphorylase (GMP1) at
ATH1-121501:245060_AT GDP-mannose pyrophosphorylase (GMP1) at
DROSOPHILA_2:1638295_S_AT dm
DROSGENOME1:153400_AT dm
HG-U133_PLUS_2:222710_AT GDP-mannose pyrophosphorylase B hs
HG-U133B:222710_AT GDP-mannose pyrophosphorylase B hs
HG-U133_PLUS_2:219920_S_AT GDP-mannose pyrophosphorylase B hs
HG-U133A:219920_S_AT GDP-mannose pyrophosphorylase B hs
HG-FOCUS:219920_S_AT GDP-mannose pyrophosphorylase B hs
HG-U133A_2:219920_S_AT GDP-mannose pyrophosphorylase B hs
HU35KSUBB:RC_H05084_AT GDP-mannose pyrophosphorylase B hs
U133_X3P:G11761620_3P_A_AT GDP-mannose pyrophosphorylase B hs
HG-U95B:44017_AT GDP-mannose pyrophosphorylase B hs
U133_X3P:HS.28077.1.A2_3P_AT GDP-mannose pyrophosphorylase B hs
MU11KSUBA:AA386901_S_AT GDP-mannose pyrophosphorylase B mm
MG-U74AV2:104351_AT GDP-mannose pyrophosphorylase B mm
MOE430A:1439030_AT GDP-mannose pyrophosphorylase B mm
MOUSE430A_2:1439030_AT GDP-mannose pyrophosphorylase B mm
MOUSE430_2:1439030_AT GDP-mannose pyrophosphorylase B mm
MU19KSUBC:TC35600_AT GDP-mannose pyrophosphorylase B, mRNA (cDNA clone MGC:74351 IMAGE:30249330) mm
MU19KSUBC:TC39799_AT GDP-mannose pyrophosphorylase B, mRNA (cDNA clone MGC:74351 IMAGE:30249330) mm
RAE230A:1392701_AT similar to GDP-mannose pyrophosphorylase B rn
RAT230_2:1392701_AT similar to GDP-mannose pyrophosphorylase B rn
RAE230B:1395329_AT similar to GDP-mannose pyrophosphorylase B rn
RAT230_2:1395329_AT similar to GDP-mannose pyrophosphorylase B rn
RG-U34C:RC_AA859302_AT Similar to GDP-mannose pyrophosphorylase B rn
YEAST_2:1770023_AT GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502333 C42C1.5 [Caenorhabditis elegans] gb|AAB97547.1| Hypothetical protein C42C1.5 [Caenorhabditis elegans] 0.0
blast CAE62215 Hypothetical protein CBG06266 [Caenorhabditis briggsae] 0.0
blast EAL28571 GA10892-PA [Drosophila pseudoobscura] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.095
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 5.8E-5
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.022
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 12.0
Pfam IPR005835 EMBL-EBI Nucleotidyl transferase 4.3E-67
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.095
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 5.8E-5
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 0.022
Pfam IPR001451 EMBL-EBI Bacterial transferase hexapeptide repeat 12.0
Pfam IPR005835 EMBL-EBI Nucleotidyl transferase 4.3E-67
Sequence
Target Sequence 
>C. ELEGANS:189635_AT
gcaggtctctacatttttagctccaaaattctcgaccgcatcccactgaaacctactagt
atcgagaaggaaattttccccgaaatggcattctctggaaatttgtacgcttttgtactt
cctggcttttggatggatgtaggtcaaccgaaagattttctcaaaggaatgtcccttttc
ctaaatcattgtcatactacaaaatccgataaactcgaaacaggatcaaacatacatcca
acagctactattcgtggaaatgtgatggttgacccatcggctactgttggagaaaattgt
gtgattgggccagatgtcgttattggtccacgtgtgaagatcgaaggtggagttcgaatc
ctgcactcgacaattctttccgattcgtcaattggcaactattcatgggtttctggaagt
atagttggtcgaaaatgtcacattggaagctgggttcgtatcgagaatatttgtgttatt
ggagatgatgtggttgtaaaggatgaattatatctcaacggtgccagtgtcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGTCTCTACATTTTTAGCTCCA 192 311 550 Antisense
TTAGCTCCAAAATTCTCGACCGCAT 362 675 566 Antisense
GCATCCCACTGAAACCTACTAGTAT 122 309 587 Antisense
TTTTCCCCGAAATGGCATTCTCTGG 605 677 623 Antisense
TGTCCCTTTTCCTAAATCATTGTCA 181 557 719 Antisense
ATACATCCAACAGCTACTATTCGTG 233 25 781 Antisense
TTGACCCATCGGCTACTGTTGGAGA 193 683 818 Antisense
GGGCCAGATGTCGTTATTGGTCCAC 179 493 856 Antisense
TGGAGTTCGAATCCTGCACTCGACA 567 549 897 Antisense
TCGACAATTCTTTCCGATTCGTCAA 571 601 916 Antisense
ATATCTCAACGGTGCCAGTGTCTTG 303 21 1059 Antisense
Sequence Source Affymetrix Proprietary Database