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[189634_at] white protein like

Description F19B6.4 /REP_DB=WormBase Gene ID /WP=CE05669 /TR=Q19585 /GB=CAA93461.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=white protein like
Cluster 6grp_total > 78      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 8.5
(-2)
A 		3.3
(-3)
A 		34.4
(3)
A 		31
(2.3)
A 		31
B 15.2
(-1.6)
A 		48.8
(3)
A 		5.3
(-3)
A 		14.9
(-1.7)
A 		44
C 19.3
(-1.3)
A 		8.8
(-3)
A 		42.2
(2.3)
A 		46.4
(3)
A 		38
avr 14.3
(-3) 		20.3
(-0.8) 		27.3
(1.7) 		30.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 5.8
(-2.9)
A 		17.6
(-2.2)
A 		3.6
(-3)
A 		22.9
(-1.8)
A 		27
(-1.6)
A 		103.3
(3)
P 		100
B 27.1
(-2)
A 		26.9
(-2)
A 		4.4
(-3)
A 		27.7
(-2)
A 		48.7
(-1)
P 		138.3
(3)
P 		134
C 9.6
(-2.9)
A 		44.2
(-0.9)
A 		10.6
(-2.8)
A 		7.6
(-3)
A 		37.2
(-1.3)
P 		113.5
(3)
P 		106
avr 14.2
(-2.6) 		29.6
(-1.7) 		6.2
(-3) 		19.4
(-2.3) 		37.6
(-1.3) 		118.4
(3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.1
(-1.3)
A 		0.7
(-3)
A 		9
(3)
A 		4.5
(-0.3)
A 		8
B 4.8
(-1)
A 		12
(3)
A 		1.2
(-3)
A 		3.2
(-1.9)
A 		11
C 6.4
(-1.1)
A 		2.5
(-3)
A 		14.7
(3)
A 		7.8
(-0.4)
A 		12
avr 4.8
(-3) 		5.1
(-2.5) 		8.3
(3) 		5.2
(-2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		6.3
(-1.6)
A 		0.8
(-3)
A 		5.8
(-1.8)
A 		8.1
(-1.2)
A 		25.1
(3)
P 		24
B 9.4
(-2)
A 		9
(-2.1)
A 		1.1
(-3)
A 		7.3
(-2.3)
A 		19.8
(-0.8)
P 		51.6
(3)
P 		51
C 3.6
(-2.7)
A 		13.5
(-1)
A 		2.7
(-2.8)
A 		1.5
(-3)
A 		12
(-1.3)
P 		38
(3)
P 		37
avr 4.7
(-2.5) 		9.6
(-1.7) 		1.5
(-3) 		4.9
(-2.4) 		13.3
(-1.1) 		38.2
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10331
Sequence Type Exemplar sequence
Representative Public ID F19B6.4 NCBI
Target Description F19B6.4 /REP_DB=WormBase Gene ID /WP=CE05669 /TR=Q19585 /GB=CAA93461.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=white protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069951 NCBI Caenorhabditis elegans F19B6.4 (F19B6.4) mRNA, complete cds. 11/11 None
SNAP00000008410 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12337617:12340388:1 11/11 None
GENEFINDER00000008412 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12337617:12340300:1 10/11 None
F19B6.4 ENSEMBL cdna:known chromosome:CEL140:IV:12337559:12340388:1 gene:F19B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12337622-12340394(+) 100.0 100.0
Public Domain and Genome References
Gene Title white protein like
Ensembl F19B6.4
Entrez Gene 178182 Entrez gene
SwissProt Q19585 EMBL-EBI
WormBase CE05669 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246580_AT ABC transporter family protein at
CANINE_2:CFAAFFX.16126.1.S1_S_AT similar to ATP-binding cassette sub-family G member 1 isoform 2 cfa
CANINE_2:CFAAFFX.16156.1.S1_S_AT similar to ATP-binding cassette sub-family G member 1 isoform 2 cfa
CHICKEN:GGA.6700.1.S1_AT ATP-binding cassette, sub-family G (WHITE), member 1 gga
CHICKEN:GGA.6700.1.S1_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 gga
CHICKEN:GGAAFFX.10317.4.S1_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 gga
CHICKEN:GGAAFFX.24868.1.S1_AT ATP-binding cassette, sub-family G (WHITE), member 1 gga
HG-U133_PLUS_2:211113_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133A:211113_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133A_2:211113_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133A:204567_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133_PLUS_2:204567_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-FOCUS:204567_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133A_2:204567_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HUGENEFL:X91249_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
U133_X3P:G8051574_3P_A_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
U133_X3P:G1314276_3P_A_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U95AV2:41362_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U95D:85324_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U133_PLUS_2:1570432_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
U133_X3P:HS2.382874.1.S1_3P_X_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
U133_X3P:1570432_3P_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U95C:55288_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HG-U95C:66554_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
HU35KSUBB:RC_AA191437_AT ATP-binding cassette, sub-family G (WHITE), member 1 hs
MOUSE430_2:1455221_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MOE430B:1455221_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MU11KSUBA:U34920_S_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MG-U74BV2:111246_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MG-U74AV2:160612_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MOE430A:1423570_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MOUSE430A_2:1423570_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
MOUSE430_2:1423570_AT ATP-binding cassette, sub-family G (WHITE), member 1 mm
RG-U34C:RC_AI179131_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAE230A:1387054_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAT230_2:1387054_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAE230A:1368103_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAT230_2:1368103_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAE230A:1373995_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RAT230_2:1373995_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
RG-U34B:RC_AA944183_AT ATP-binding cassette, sub-family G (WHITE), member 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93461 Hypothetical protein F19B6.4 [Caenorhabditis elegans] ref|NP_502352.1| F19B6.4 [Caenorhabditis elegans] 0.0
blast CAE66487 Hypothetical protein CBG11767 [Caenorhabditis briggsae] 0.0
blast CAE73643 Hypothetical protein CBG21143 [Caenorhabditis briggsae] 3.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 2.8E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502352.1 7 431-453,465-487,520-542,547-566,571-593,600-622,666-688
F19B6.4 7 431-453,465-487,520-542,547-566,571-593,600-622,666-688
SNAP00000008410 7 431-453,465-487,520-542,547-566,571-593,600-622,666-688
GENEFINDER00000008412 6 431-453,465-487,520-542,547-566,571-593,600-622
Sequence
Target Sequence 
>C. ELEGANS:189634_AT
agcatccaatatctggtgttccctgtcatttttagtggtattctacttggaatgactagt
cttccctatagtgttgtgattattactaactacttgatcatcaatattcttctcagtttg
aatgcttgctcagttggacaatcatttgctgcaatgtgtggacacttggcaaccggaatg
acagttcttccaatcgtctgtgtgcctttaatggttttcggtggatttatgatcacttat
gaagcaattccttggtactttttgccatttgcatgggtttcgtggtacaaatacggattc
gaggcgatcactattgtatatttcaatcacaatagcaccatttcgggatgtgaatccaac
tcgtctgttgctactttgaaaatgtcgattgacagtaattgtactactggaattgaattc
atcaaagcacaagcatttgaggaaactcatttgtggttggattatactgtcattttggct
gtaatcttgttctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCCAATATCTGGTGTTCCCTG 386 77 1558 Antisense
GTGTTCCCTGTCATTTTTAGTGGTA 373 483 1573 Antisense
TAGTCTTCCCTATAGTGTTGTGATT 485 653 1614 Antisense
GAATGCTTGCTCAGTTGGACAATCA 465 331 1677 Antisense
ATGTGTGGACACTTGGCAACCGGAA 522 49 1711 Antisense
GAATGACAGTTCTTCCAATCGTCTG 183 331 1733 Antisense
AATCGTCTGTGTGCCTTTAATGGTT 16 169 1749 Antisense
CAATTCCTTGGTACTTTTTGCCATT 234 179 1802 Antisense
CAATCACAATAGCACCATTTCGGGA 54 175 1881 Antisense
GAATCCAACTCGTCTGTTGCTACTT 620 329 1909 Antisense
TTTTGGCTGTAATCTTGTTCTGGAA 31 677 2030 Antisense
Sequence Source Affymetrix Proprietary Database