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[189630_s_at] Carboxylesterases

Description Y75B8A.3 /REP_DB=WormBase Gene ID /WP=CE23015 /TR=Q9XW75 /GB=CAA22094.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Carboxylesterases
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 84      6grp_total > 56      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 678.3
(2.8)
P 		509.4
(-1.2)
P 		685.3
(3)
P 		434.6
(-3)
P 		251
B 674.5
(2.8)
P 		683.7
(3)
P 		614
(1.6)
P 		381.3
(-3)
P 		302
C 644.9
(2.8)
P 		587.5
(1.3)
P 		654
(3)
P 		414.4
(-3)
P 		240
avr 665.9
(3) 		593.5
(1.3) 		651.1
(2.7) 		410.1
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 942
1 2 3 4 5 6 range
A 693.7
(-1.1)
P 		762.4
(-0.7)
P 		419.5
(-2.9)
P 		521
(-2.2)
P 		404.4
(-3)
P 		1319.7
(3)
P 		915
B 595.6
(-0.9)
P 		700.9
(0.2)
P 		409.6
(-3)
P 		507.9
(-1.9)
P 		413.7
(-3)
P 		947.7
(3)
P 		538
C 542
(-1.5)
P 		683.6
(-0.3)
P 		621.9
(-0.8)
P 		497.7
(-1.9)
P 		377.9
(-3)
P 		1048.1
(3)
P 		670
avr 610.4
(-1.2) 		715.6
(-0.3) 		483.7
(-2.3) 		508.9
(-2.1) 		398.7
(-3) 		1105.2
(3) 		707
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 247
(3)
P 		110.6
(-1.5)
P 		179.2
(0.8)
P 		63.6
(-3)
P 		183
B 215.1
(3)
P 		168.9
(0.9)
P 		142.3
(-0.3)
P 		81.3
(-3)
P 		134
C 213.5
(2.5)
P 		168.9
(0.8)
P 		227.9
(3)
P 		69.9
(-3)
P 		158
avr 225.2
(3) 		149.5
(0) 		183.1
(1.4) 		71.6
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 127.9
(-2)
P 		271.1
(1.7)
P 		91.4
(-3)
P 		132.1
(-1.9)
P 		122
(-2.2)
P 		321.3
(3)
P 		230
B 207.3
(-0.5)
P 		233.3
(0.2)
P 		99.5
(-3)
P 		134.5
(-2.2)
P 		168.1
(-1.4)
P 		353.4
(3)
P 		254
C 200.9
(-0.6)
P 		208.6
(-0.4)
P 		158.3
(-1.6)
P 		100.1
(-3)
P 		122.3
(-2.5)
P 		350.9
(3)
P 		251
avr 178.7
(-1.3) 		237.7
(0.2) 		116.4
(-3) 		122.2
(-2.8) 		137.5
(-2.4) 		341.9
(3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189630_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6338
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.3 NCBI
Target Description Y75B8A.3 /REP_DB=WormBase Gene ID /WP=CE23015 /TR=Q9XW75 /GB=CAA22094.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Carboxylesterases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067175 NCBI Caenorhabditis elegans Y75B8A.3 (Carboxylesterases) mRNA, complete cds. 11/11 None
GENEFINDER00000020189 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12098751:12106368:-1 11/11 None
SNAP00000020068 ENSEMBL cdna:SNAP chromosome:CEL140:III:12100838:12108886:-1 11/11 None
Y75B8A.3 ENSEMBL cdna:known chromosome:CEL140:III:12101686:12106410:-1 gene:Y75B8A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12101740-12106364(-) 100.0 100.0
Public Domain and Genome References
Gene Title Carboxylesterases
Ensembl Y75B8A.3
Entrez Gene 176642 Entrez gene
SwissProt Q9XW75 EMBL-EBI
WormBase CE31859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22094 Hypothetical protein Y75B8A.3 [Caenorhabditis elegans] ref|NP_499576.2| Y75B8A.3 [Caenorhabditis elegans] 0.0
blast CAE75109 Hypothetical protein CBG23034 [Caenorhabditis briggsae] 0.0
blast AAF52792 CG4382-PA [Drosophila melanogaster] ref|NP_609301.1| CG4382-PA [Drosophila melanogaster] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.9E-25
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.6E-43
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 4.2E-24
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 6.6E-43
Sequence
Target Sequence 
>C. ELEGANS:189630_S_AT
tcacgtccgtgtctatcagttcactcacgtctcggaagttggaagaaacactgttcccga
cacaggagccaactggaaaccggtcttcaagggacaggacatgtacttcatcacaatgtc
ggaaacgatttggacaaactccaactatactccacaggatcgacaggtggctaatcaaat
gggacagaggtggtcggatttcgtgaagactggaaatgtggccaactgggatacgactaa
tcagcagaattataactattgtaacttgaatactcaagccactcaacaggcacagtatgg
gcaacaagcgaggagggtgttccaggatcaagttaatccaattgttcgaatagctcaaaa
caactacgccatggcaaataatcaatcaataccgtacccatctgcatctggatctcaaat
ttctcgagcacccggcacagctcaggctcagtatacaaataacgccaatggaggttccaa
ctttcatctcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGTCCGTGTCTATCAGTTCACT 402 625 1506 Antisense
GTTCACTCACGTCTCGGAAGTTGGA 271 445 1524 Antisense
GAAACACTGTTCCCGACACAGGAGC 122 357 1550 Antisense
GGGACAGGACATGTACTTCATCACA 209 495 1596 Antisense
AACTCCAACTATACTCCACAGGATC 369 141 1642 Antisense
GCCACTCAACAGGCACAGTATGGGC 564 279 1783 Antisense
ATCAATCAATACCGTACCCATCTGC 703 25 1886 Antisense
ACCCATCTGCATCTGGATCTCAAAT 46 89 1901 Antisense
GATCTCAAATTTCTCGAGCACCCGG 651 411 1916 Antisense
GGCACAGCTCAGGCTCAGTATACAA 592 535 1939 Antisense
TGGAGGTTCCAACTTTCATCTCACA 609 549 1974 Antisense
Sequence Source Affymetrix Proprietary Database