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[189628_at]

Description R01E6.3 /REP_DB=WormBase Gene ID /WP=CE18900 /TR=Q21614 /GB=CAA92190.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 48      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2583
1 2 3 4 range
A 2205.4
(-3)
P 		3981.2
(2.1)
P 		4289
(3)
P 		3041.7
(-0.6)
P 		2084
B 2367.7
(-3)
P 		3671.4
(0.2)
P 		4788.1
(3)
P 		2806.5
(-1.9)
P 		2420
C 2624.7
(-1.7)
P 		3115.7
(-0.1)
P 		4068.1
(3)
P 		2237.1
(-3)
P 		1831
avr 2399.3
(-3) 		3589.4
(0.6) 		4381.7
(3) 		2695.1
(-2.1) 		1982

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2157
1 2 3 4 5 6 range
A 2543.1
(3)
P 		2164.1
(1.9)
P 		482.1
(-3)
P 		524.9
(-2.8)
P 		851.3
(-1.9)
P 		467.1
(-3)
P 		2076
B 1730.2
(2.7)
P 		1794.6
(3)
P 		652.5
(-1.9)
P 		422
(-2.8)
P 		808.5
(-1.2)
P 		386.2
(-3)
P 		1408
C 2479.2
(3)
P 		1715.2
(0.8)
P 		654.1
(-2.2)
P 		569.6
(-2.5)
P 		881.9
(-1.6)
P 		392.7
(-3)
P 		2087
avr 2250.8
(3) 		1891.3
(1.8) 		596.2
(-2.4) 		505.5
(-2.7) 		847.2
(-1.6) 		415.3
(-3) 		1836
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1041
1 2 3 4 range
A 803
(0.2)
P 		864.2
(0.7)
P 		1121.2
(3)
P 		445.2
(-3)
P 		676
B 755
(-1.2)
P 		906.7
(0.6)
P 		1109.5
(3)
P 		598.1
(-3)
P 		511
C 868.9
(-0.2)
P 		895.8
(-0)
P 		1417.9
(3)
P 		377.2
(-3)
P 		1041
avr 809
(-0.3) 		888.9
(0.4) 		1216.2
(3) 		473.5
(-3) 		743

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 814
1 2 3 4 5 6 range
A 468.8
(0.3)
P 		769.7
(3)
P 		105
(-3)
P 		133.1
(-2.7)
P 		256.9
(-1.6)
P 		113.7
(-2.9)
P 		665
B 602
(3)
P 		597.3
(2.9)
P 		158.5
(-2.4)
P 		111.8
(-3)
P 		328.5
(-0.3)
P 		144
(-2.6)
P 		490
C 918.9
(3)
P 		523.4
(0)
P 		166.5
(-2.6)
P 		114.6
(-3)
P 		285.4
(-1.7)
P 		131.5
(-2.9)
P 		804
avr 663.2
(3) 		630.1
(2.6) 		143.3
(-2.7) 		119.8
(-3) 		290.3
(-1.1) 		129.7
(-2.9) 		543
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17868
Sequence Type Exemplar sequence
Representative Public ID R01E6.3 NCBI
Target Description R01E6.3 /REP_DB=WormBase Gene ID /WP=CE18900 /TR=Q21614 /GB=CAA92190.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=carbonic anhydrase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077863(11), NM_077864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077863 NCBI Caenorhabditis elegans Carbonic AnHydrase family member (cah-4) (cah-4) mRNA, complete cds. 11/11 None
NM_077864 NCBI Caenorhabditis elegans Carbonic AnHydrase family member (cah-4) (cah-4) mRNA, complete cds. 11/11 None
GENEFINDER00000031401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13541354:13544291:1 11/11 None
SNAP00000031389 ENSEMBL cdna:SNAP chromosome:CEL140:X:13542957:13544291:1 11/11 None
R01E6.3b ENSEMBL cdna:known chromosome:CEL140:X:13542493:13544512:1 gene:R01E6.3 11/11 None
R01E6.3a ENSEMBL cdna:known chromosome:CEL140:X:13542935:13544291:1 gene:R01E6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13543000-13544291(+) 100.0 100.0
Public Domain and Genome References
Ensembl R01E6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92190 Hypothetical protein R01E6.3a [Caenorhabditis elegans] ref|NP_510265.1| Carbonic AnHydrase family member (cah-4) [Caenorhabditis elegans] 1.0E-152
blast CAD18873 Hypothetical protein R01E6.3b [Caenorhabditis elegans] ref|NP_510264.1| Carbonic AnHydrase family member (cah-4) [Caenorhabditis elegans] 1.0E-139
blast CAA92190 Hypothetical protein R01E6.3a [Caenorhabditis elegans] ref|NP_510265.1| Carbonic AnHydrase family member (cah-4) [Caenorhabditis elegans] 1.0E-139
blast CAA92190 Hypothetical protein R01E6.3a [Caenorhabditis elegans] ref|NP_510265.1| Carbonic AnHydrase family member (cah-4) [Caenorhabditis elegans] 1.0E-138
blast CAD18873 Hypothetical protein R01E6.3b [Caenorhabditis elegans] ref|NP_510264.1| Carbonic AnHydrase family member (cah-4) [Caenorhabditis elegans] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR001148 EMBL-EBI Carbonic anhydrase, eukaryotic 1.3E-40
Pfam IPR001148 EMBL-EBI Carbonic anhydrase, eukaryotic 1.3E-40
Pfam IPR001148 EMBL-EBI Carbonic anhydrase, eukaryotic 1.3E-40
Sequence
Target Sequence 
>C. ELEGANS:189628_AT
aggtgactgttgcgatgtccttgtctccgaaggaggtttccttgtgaatgtcaagagaaa
ttgtggcacattccttaccgccaaccatttaccatcatcaaaattcgcgttggctcagtt
ccatgctcattggggaagcaactcgaaagaaggatccgagcactttttggacggaaaaca
acttagcggagaggttcactttgtattctggaacaccagctatgagtcgtttaatgtggc
actcagcaagcccgatggattggcggttgttggagtcttcttgaaggaaggaaaatacaa
tgacaattaccatggcctgatcgacacagtgcgcaaagccaccggaaatgccacaccaat
tgccatgccaaaagacttccacattgagcatcttctcccatccccggacaagagagaatt
cgttacatacctcggatcccttaccaccccaccatacaacgagtgtgttatctggacctt
gttcacagagcctgtggaggtctccttcggacagctcaacgtgctccgtaatatcatccc
cgccaatcatcgcgcctgccaagacagatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGACTGTTGCGATGTCCTTGTC 11 57 189 Antisense
AAATTGTGGCACATTCCTTACCGCC 439 113 246 Antisense
AAAATTCGCGTTGGCTCAGTTCCAT 692 133 288 Antisense
TAATGTGGCACTCAGCAAGCCCGAT 203 635 420 Antisense
ATGGCCTGATCGACACAGTGCGCAA 523 53 500 Antisense
AGACTTCCACATTGAGCATCTTCTC 607 71 561 Antisense
AGAATTCGTTACATACCTCGGATCC 25 71 603 Antisense
CCACCCCACCATACAACGAGTGTGT 151 275 632 Antisense
ACGAGTGTGTTATCTGGACCTTGTT 7 95 647 Antisense
TCAACGTGCTCCGTAATATCATCCC 519 631 704 Antisense
TCATCGCGCCTGCCAAGACAGATGC 287 621 735 Antisense
Sequence Source Affymetrix Proprietary Database