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[189622_at] olfactory receptor

Description C51E3.1 /REP_DB=WormBase Gene ID /WP=CE08934 /TR=Q18768 /GB=CAB01638.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor
Cluster 6grp_total > 32      4grp_total > 12      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 73.5
(-1)
M 		68.1
(-1.2)
A 		13.2
(-3)
A 		198
(3)
P 		185
B 68.5
(-0.9)
P 		36.6
(-3)
A 		60
(-1.5)
A 		128.7
(3)
P 		92
C 96.1
(0.2)
M 		19.2
(-2.9)
A 		16.3
(-3)
A 		166.4
(3)
P 		150
avr 79.4
(-0.8) 		41.3
(-2.5) 		29.8
(-3) 		164.4
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 94.1
(2.3)
A 		9.7
(-3)
A 		104.7
(3)
A 		19.7
(-2.4)
A 		88.8
(2)
A 		27
(-1.9)
A 		95
B 66.7
(2.6)
A 		71.5
(3)
A 		26.6
(-1.1)
A 		70
(2.9)
A 		39.3
(0)
A 		6.4
(-3)
A 		65
C 7.3
(-3)
A 		88.1
(3)
P 		59.2
(0.9)
A 		47.7
(0)
A 		43.9
(-0.3)
A 		33.3
(-1.1)
A 		81
avr 56
(1.9) 		56.4
(2) 		63.5
(3) 		45.8
(0.4) 		57.3
(2.1) 		22.2
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 26.8
(2.5)
M 		14.8
(-0.3)
A 		3.4
(-3)
A 		29
(3)
P 		26
B 21.8
(1.2)
P 		9.1
(-3)
A 		13.9
(-1.4)
A 		27.4
(3)
P 		18
C 31.8
(3)
M 		5.5
(-3)
A 		5.7
(-3)
A 		28.1
(2.2)
P 		26
avr 26.8
(2.6) 		9.8
(-2.4) 		7.7
(-3) 		28.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 17.3
(0.6)
A 		3.4
(-3)
A 		22.8
(2)
A 		5
(-2.6)
A 		26.8
(3)
A 		6.6
(-2.2)
A 		23
B 23.2
(2.8)
A 		23.8
(3)
A 		6.5
(-1.9)
A 		18.5
(1.5)
A 		16
(0.8)
A 		2.4
(-3)
A 		21
C 2.7
(-3)
A 		26.9
(3)
P 		15.1
(0.1)
A 		9.6
(-1.3)
A 		14.2
(-0.1)
A 		11.1
(-0.9)
A 		24
avr 14.4
(0.8) 		18
(2.5) 		14.8
(1) 		11
(-0.9) 		19
(3) 		6.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11897
Sequence Type Exemplar sequence
Representative Public ID C51E3.1 NCBI
Target Description C51E3.1 /REP_DB=WormBase Gene ID /WP=CE08934 /TR=Q18768 /GB=CAB01638.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073207 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-26) (srsx-26) mRNA, complete cds. 11/11 None
SNAP00000031198 ENSEMBL cdna:SNAP chromosome:CEL140:V:10150934:10153129:1 11/11 None
GENEFINDER00000031207 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10146920:10154740:1 10/11 None
C51E3.1 ENSEMBL cdna:known chromosome:CEL140:V:10151674:10153129:1 gene:C51E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10150737-10153129(+) 100.0 100.0
Public Domain and Genome References
Gene Title olfactory receptor
Gene Symbol srsx-26
Ensembl C51E3.1
Entrez Gene 183703 Entrez gene
SwissProt Q18768 EMBL-EBI
WormBase CE31333 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01638 Hypothetical protein C51E3.1 [Caenorhabditis elegans] ref|NP_505608.2| Serpentine Receptor, class SX family member (srsx-26) [Caenorhabditis elegans] 0.0
blast CAB01638 Hypothetical protein C51E3.1 [Caenorhabditis elegans] ref|NP_505608.2| Serpentine Receptor, class SX family member (srsx-26) [Caenorhabditis elegans] 1.0E-177
blast CAB01638 Hypothetical protein C51E3.1 [Caenorhabditis elegans] ref|NP_505608.2| Serpentine Receptor, class SX family member (srsx-26) [Caenorhabditis elegans] 1.0E-142
blast CAB01636 Hypothetical protein C51E3.2 [Caenorhabditis elegans] ref|NP_505609.2| Serpentine Receptor, class SX family member (srsx-27) [Caenorhabditis elegans] 1.0E-133
blast CAD44102 Hypothetical protein C51E3.9 [Caenorhabditis elegans] ref|NP_741613.1| C51E3.9 [Caenorhabditis elegans] 1.0E-125
blast CAB01636 Hypothetical protein C51E3.2 [Caenorhabditis elegans] ref|NP_505609.2| Serpentine Receptor, class SX family member (srsx-27) [Caenorhabditis elegans] 1.0E-97
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505608.2 7 10-32,44-66,81-103,123-145,169-191,204-226,241-263
C51E3.1 7 10-32,44-66,81-103,123-145,169-191,204-226,241-263
SNAP00000031198 5 79-101,121-143,167-189,202-224,239-261
GENEFINDER00000031207 14 286-305,315-337,350-372,387-409,429-451,475-497,510-532,547-569,624-646,661-683,704-726,736-752,764-786,801-823
Sequence
Target Sequence 
>C. ELEGANS:189622_AT
tacagttggtgttccccattttctacactctattttttcttgtcttcggatttttggaaa
gagattcaacaatgcaaataacatgtgcaaacccgcttgcgcttaatggcccttcttttc
aatggtataattatacatgcgcatttatttattttggaatactttttgtctacataaaag
tctacgttcttctaaagtttaacaaaacaagctctcgcttcaaagctgtatttcgctcaa
tcctagtaactgtaagtttcgtcctgtttggatgggcaactacaactattgcaaacgcag
cttcttattctgttacagacaatgttgatatagctcatttgattcaaacttatgcaggaa
ttactgtcaactttgcagccgcatcgaacgtattcgttttctattcaataaattccgaat
atcgtgaagctatccgtgccttatttggacaatccaagaaaatcggagcaattcacaccg
agacatctacatctcaagaagtggttcataattcaaaacgatcaaagtctgtttctatat
tatcaatgcccaagtttgtctcatcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTTGGTGTTCCCCATTTTCTA 112 641 695 Antisense
CACTCTATTTTTTCTTGTCTTCGGA 29 199 720 Antisense
ATAACATGTGCAAACCCGCTTGCGC 381 25 772 Antisense
GCTTAATGGCCCTTCTTTTCAATGG 68 281 795 Antisense
GTATTTCGCTCAATCCTAGTAACTG 76 453 922 Antisense
ACTGTAAGTTTCGTCCTGTTTGGAT 568 95 943 Antisense
GCAAACGCAGCTTCTTATTCTGTTA 175 319 985 Antisense
TTACTGTCAACTTTGCAGCCGCATC 508 683 1055 Antisense
TATCGTGAAGCTATCCGTGCCTTAT 126 657 1114 Antisense
GAGCAATTCACACCGAGACATCTAC 572 389 1160 Antisense
AATGCCCAAGTTTGTCTCATCATCT 433 167 1239 Antisense
Sequence Source Affymetrix Proprietary Database