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[189618_at] paramyosin like

Description B0035.4 /REP_DB=WormBase Gene ID /WP=CE05162 /TR=SW:Q17435 /GB=CAA97410.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=paramyosin like
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 44      6grp_total > 20      4grp_total > 32      6grp_highest_sub > 03      6grp_cgc > 73      6grp_high1_sub > 03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 974
1 2 3 4 range
A 1203.4
(-3)
P 		1215
(-2.9)
P 		1730.7
(0.9)
P 		2019.9
(3)
P 		817
B 1076
(-3)
P 		1651.8
(0.9)
P 		1966.7
(3)
P 		1780.1
(1.7)
P 		891
C 1207.1
(-3)
P 		1527.9
(-0.7)
P 		1883.4
(1.8)
P 		2049.5
(3)
P 		842
avr 1162.2
(-3) 		1464.9
(-0.7) 		1860.3
(2.3) 		1949.8
(3) 		788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2102
1 2 3 4 5 6 range
A 1199.9
(-2.9)
P 		1828.2
(-1.1)
P 		3272.2
(3)
P 		2063.8
(-0.4)
P 		1372.9
(-2.4)
P 		1169.8
(-3)
P 		2102
B 1538.5
(-3)
P 		2446
(0.4)
P 		3149.7
(3)
P 		1891.3
(-1.7)
P 		1971.1
(-1.4)
P 		1658.6
(-2.6)
P 		1611
C 1269.8
(-3)
P 		2685.6
(3)
P 		1457.9
(-2.2)
P 		2556.6
(2.5)
P 		1486.4
(-2.1)
P 		2199.8
(0.9)
P 		1416
avr 1336.1
(-3) 		2319.9
(1.6) 		2626.6
(3) 		2170.6
(0.9) 		1610.1
(-1.7) 		1676.1
(-1.4) 		1291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 438.1
(2.5)
P 		263.7
(-3)
P 		452.4
(3)
P 		295.7
(-2)
P 		189
B 343.1
(-3)
P 		408
(0.5)
P 		455.7
(3)
P 		379.3
(-1.1)
P 		113
C 399.6
(-2)
P 		439.3
(-1.2)
P 		656.4
(3)
P 		345.6
(-3)
P 		311
avr 393.6
(-1.2) 		370.3
(-2) 		521.5
(3) 		340.2
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 221.2
(-3)
P 		650.2
(2.2)
P 		712.6
(3)
P 		523.4
(0.7)
P 		414.3
(-0.6)
P 		284.8
(-2.2)
P 		491
B 535.3
(-2.3)
P 		814.2
(3)
P 		764.8
(2.1)
P 		500.9
(-3)
P 		800.8
(2.7)
P 		618.5
(-0.7)
P 		313
C 470.6
(-1.7)
P 		819.5
(3)
P 		371.1
(-3)
P 		514.1
(-1.1)
P 		481
(-1.5)
P 		736.4
(1.9)
P 		448
avr 409
(-3) 		761.3
(3) 		616.2
(0.5) 		512.8
(-1.2) 		565.4
(-0.3) 		546.6
(-0.7) 		352
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9414
Sequence Type Exemplar sequence
Representative Public ID B0035.4 NCBI
Target Description B0035.4 /REP_DB=WormBase Gene ID /WP=CE05162 /TR=SW:Q17435 /GB=CAA97410.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=paramyosin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069727 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-317) (tag-317) mRNA, complete cds. 11/11 None
SNAP00000035833 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11315179:11315682:1 11/11 None
GENEFINDER00000035860 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11315179:11315682:1 11/11 None
B0035.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:11315176:11315848:1 gene:B0035.4 11/11 None
B0035.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:11315178:11316036:1 gene:B0035.4 11/11 None
B0035.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:11315178:11315848:1 gene:B0035.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11315184-11315688(+) 100.0 100.0
Public Domain and Genome References
Gene Title paramyosin like
Gene Symbol tag-317
Ensembl B0035.4
Entrez Gene 178045 Entrez gene
SwissProt Q17435 EMBL-EBI
WormBase CE05162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97410 Hypothetical protein B0035.4 [Caenorhabditis elegans] ref|NP_502128.1| Temporarily Assigned Gene name family member (tag-317) [Caenorhabditis elegans] gb|AAG41147.1| 4M79 [Caenorhabditis elegans] sp|Q17435|PFD4_CAEEL Probable prefoldin subunit 1.0E-54
blast CAE62053 Hypothetical protein CBG06071 [Caenorhabditis briggsae] 1.0E-41
Sequence
Target Sequence 
>C. ELEGANS:189618_AT
gccggaacacacgaaagtttctgctgaagaccaagcgcttctcaataaattcgctcggtc
ataccaaacacaaacccagttaaaagcagacgttaaagaagctaaaacactcattgacaa
tatcaatgaagcaagtgatgaaattttgttgctcgatgatgaggattcagcatcaattcc
atgcagaattggaagctgcttcgttcatttcaatggggatagtctgaatgagcatttgga
aggaaagaagacaacagcagagaaggttttgtctgagaaaacctccgagttggatgcaat
ctcagcggacatggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGAACACACGAAAGTTTCTGCT 566 283 15 Antisense
TCTGCTGAAGACCAAGCGCTTCTCA 246 609 34 Antisense
CGCTTCTCAATAAATTCGCTCGGTC 393 253 50 Antisense
ATTCGCTCGGTCATACCAAACACAA 589 5 63 Antisense
GAAGCTAAAACACTCATTGACAATA 404 341 112 Antisense
GATGAAATTTTGTTGCTCGATGATG 29 413 151 Antisense
GAGGATTCAGCATCAATTCCATGCA 497 403 175 Antisense
AAGCTGCTTCGTTCATTTCAATGGG 642 149 207 Antisense
GGGGATAGTCTGAATGAGCATTTGG 707 497 229 Antisense
AAACCTCCGAGTTGGATGCAATCTC 607 125 293 Antisense
GATGCAATCTCAGCGGACATGGAGC 560 411 307 Antisense
Sequence Source Affymetrix Proprietary Database