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[189616_at]

Description F25G6.7 /REP_DB=WormBase Gene ID /WP=CE09643 /TR=O16923 /GB=AAC25800.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_high1_10_10 > 15      6grp_total > 05      4grp_total > 58      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 217.5
(-0.3)
P 		322.8
(2.7)
P 		332.9
(3)
P 		122.7
(-3)
M 		210
B 210.1
(-1)
P 		410.5
(3)
P 		397.7
(2.7)
P 		111
(-3)
A 		300
C 217
(-0.9)
P 		429.5
(3)
P 		377.2
(2)
P 		104.7
(-3)
A 		325
avr 214.9
(-0.8) 		387.6
(3) 		369.3
(2.6) 		112.8
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 393.2
(3)
P 		272.5
(0.3)
P 		162.2
(-2.1)
P 		201.5
(-1.3)
P 		272.9
(0.3)
P 		122.7
(-3)
M 		271
B 361.3
(3)
P 		310
(1.4)
P 		228.2
(-1)
P 		209.6
(-1.6)
P 		175.6
(-2.6)
P 		163
(-3)
P 		198
C 284.6
(1.4)
P 		332.4
(3)
P 		195.5
(-1.7)
P 		217.9
(-0.9)
P 		196.3
(-1.7)
P 		157
(-3)
P 		175
avr 346.4
(3) 		305
(1.8) 		195.3
(-1.6) 		209.7
(-1.1) 		214.9
(-1) 		147.6
(-3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 79.2
(2.3)
P 		70.1
(1.5)
P 		87
(3)
P 		18
(-3)
M 		69
B 67
(0.3)
P 		101.4
(3)
P 		92.2
(2.3)
P 		23.7
(-3)
A 		78
C 71.8
(-0.1)
P 		123.5
(2.6)
P 		131.5
(3)
P 		17.6
(-3)
A 		114
avr 72.7
(0.8) 		98.3
(2.6) 		103.6
(3) 		19.8
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 72.5
(0.8)
P 		96.9
(3)
P 		35.3
(-2.5)
P 		51.1
(-1.1)
P 		82.4
(1.7)
P 		29.9
(-3)
M 		67
B 125.7
(3)
P 		103.2
(1.1)
P 		55.4
(-3)
P 		55.5
(-3)
P 		71.3
(-1.6)
P 		60.8
(-2.5)
P 		70
C 105.5
(3)
P 		101.4
(2.6)
P 		49.8
(-2.4)
P 		43.8
(-3)
P 		63.5
(-1.1)
P 		52.6
(-2.1)
P 		62
avr 101.2
(3) 		100.5
(2.9) 		46.8
(-3) 		50.1
(-2.6) 		72.4
(-0.2) 		47.8
(-2.9) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11494
Sequence Type Exemplar sequence
Representative Public ID F25G6.7 NCBI
Target Description F25G6.7 /REP_DB=WormBase Gene ID /WP=CE09643 /TR=O16923 /GB=AAC25800.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028678(11), NM_001028677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028678 NCBI Caenorhabditis elegans F25G6.7b (F25G6.7) mRNA, complete cds. 11/11 None
NM_001028677 NCBI Caenorhabditis elegans F25G6.7a (F25G6.7) mRNA, complete cds. 11/11 None
SNAP00000003975 ENSEMBL cdna:SNAP chromosome:CEL140:V:8542558:8544245:-1 11/11 None
GENEFINDER00000003992 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8542558:8545866:-1 11/11 None
F25G6.7b ENSEMBL cdna:known chromosome:CEL140:V:8542331:8548154:-1 gene:F25G6.7 11/11 None
F25G6.7a ENSEMBL cdna:known chromosome:CEL140:V:8542558:8545847:-1 gene:F25G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8542558-8544246(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25G6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81194 Hypothetical protein F25G6.7b [Caenorhabditis elegans] ref|NP_001023849.1| F25G6.7b [Caenorhabditis elegans] 0.0
blast AAC25800 Hypothetical protein F25G6.7a [Caenorhabditis elegans] ref|NP_001023848.1| F25G6.7a [Caenorhabditis elegans] 0.0
blast CAE58369 Hypothetical protein CBG01496 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023849.1 11 35-57,96-115,122-144,149-171,183-205,215-237,284-306,321-343,356-378,415-437,450-472
NP_001023848.1 11 49-71,110-129,136-158,163-185,197-219,229-251,298-320,335-357,370-392,429-451,464-486
F25G6.7b 11 35-57,96-115,122-144,149-171,183-205,215-237,284-306,321-343,356-378,415-437,450-472
F25G6.7a 11 49-71,110-129,136-158,163-185,197-219,229-251,298-320,335-357,370-392,429-451,464-486
SNAP00000003975 11 23-45,84-103,110-132,137-159,171-193,203-225,272-294,309-331,344-366,403-425,438-460
GENEFINDER00000003992 11 77-99,138-157,164-186,191-213,225-247,257-279,326-348,363-385,398-420,457-479,492-514
Sequence
Target Sequence 
>C. ELEGANS:189616_AT
cacggaaaacggtatcctctctgcacttccgacagtttctctctggtttgctaagatagg
atcatcctacttgaacacttggcttcaaaagaacaccacttggaagaaagacacaatttg
caaagttctcaactctattggatctattggattaggtgtcttccttctagctgccacatt
ccttgacaatgaacatgcctggatggctgttctcttcctctgcctcagtatggcttcagc
cggccttcacactcctggatgtcaattggctcttgtttctgtggctccggcctattctgg
agctgtcactggattcacattcttctttgtcgcagtttctggaatcattcatccaattat
cacaaagatgattgttaaagatcgtaccgctgctgaatggaatctcgttttctacatttc
aac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGGAAAACGGTATCCTCTCTGCA 501 199 927 Antisense
GACAGTTTCTCTCTGGTTTGCTAAG 276 369 957 Antisense
GGATCATCCTACTTGAACACTTGGC 167 511 985 Antisense
TGGATTAGGTGTCTTCCTTCTAGCT 286 547 1074 Antisense
TAGCTGCCACATTCCTTGACAATGA 367 651 1094 Antisense
ACATGCCTGGATGGCTGTTCTCTTC 422 107 1119 Antisense
CTCTGCCTCAGTATGGCTTCAGCCG 284 231 1144 Antisense
GCCTTCACACTCCTGGATGTCAATT 563 281 1169 Antisense
GTCAATTGGCTCTTGTTTCTGTGGC 548 463 1187 Antisense
GTCACTGGATTCACATTCTTCTTTG 562 465 1231 Antisense
GGAATCTCGTTTTCTACATTTCAAC 370 533 1325 Antisense
Sequence Source Affymetrix Proprietary Database