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[189614_at]

Description F07C4.12 /REP_DB=WormBase Gene ID /WP=CE09211 /TR=P91218 /GB=AAG24043.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_total > 30      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 26.5
(3)
A 		7.3
(-1.7)
A 		2.1
(-3)
A 		19
(1.2)
A 		24
B 46.2
(3)
A 		1.9
(-3)
A 		12.7
(-1.5)
A 		36
(1.6)
A 		44
C 49.8
(3)
P 		33.6
(0.9)
A 		3.8
(-3)
A 		41.5
(1.9)
P 		46
avr 40.8
(3) 		14.3
(-1.6) 		6.2
(-3) 		32.2
(1.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.9
(0.7)
A 		16.7
(-1.3)
A 		45.7
(3)
A 		6.1
(-2.9)
A 		9.1
(-2.4)
A 		5.1
(-3)
A 		41
B 5.2
(-3)
A 		19.1
(0.9)
A 		7
(-2.5)
A 		15
(-0.3)
A 		26.8
(3)
A 		25.4
(2.6)
A 		22
C 14.6
(-1.2)
A 		28
(1)
A 		4.8
(-2.8)
A 		39.7
(3)
A 		3.8
(-3)
A 		16.3
(-0.9)
A 		36
avr 16.6
(-0.5) 		21.3
(3) 		19.2
(1.4) 		20.3
(2.3) 		13.2
(-3) 		15.6
(-1.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.6
(3)
A 		1.6
(-2.3)
A 		0.5
(-3)
A 		2.8
(-1.5)
A 		9
B 14.7
(3)
A 		0.5
(-3)
A 		2.9
(-2)
A 		7.7
(0)
A 		14
C 16.5
(3)
P 		9.7
(0.3)
A 		1.3
(-3)
A 		7
(-0.8)
P 		15
avr 13.6
(3) 		3.9
(-1.9) 		1.6
(-3) 		5.8
(-0.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.5
(-0.1)
A 		5.9
(0.2)
A 		10
(3)
A 		1.5
(-2.8)
A 		2.8
(-1.9)
A 		1.2
(-3)
A 		9
B 1.8
(-2.9)
A 		6.4
(0.1)
A 		1.7
(-3)
A 		4
(-1.5)
A 		10.9
(3)
A 		9.5
(2.1)
A 		9
C 5.4
(0.4)
A 		8.6
(3)
A 		1.2
(-3)
A 		8
(2.5)
A 		1.2
(-3)
A 		5.5
(0.5)
A 		7
avr 4.2
(-3) 		7
(3) 		4.3
(-2.8) 		4.5
(-2.4) 		5
(-1.3) 		5.4
(-0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12084
Sequence Type Exemplar sequence
Representative Public ID F07C4.12 NCBI
Target Description F07C4.12 /REP_DB=WormBase Gene ID /WP=CE09211 /TR=P91218 /GB=AAG24043.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072580 NCBI Caenorhabditis elegans F07C4.12 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000003397 ENSEMBL cdna:SNAP chromosome:CEL140:V:7650428:7652409:-1 11/11 None
GENEFINDER00000003408 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7650428:7655677:-1 11/11 None
F07C4.12 ENSEMBL cdna:known chromosome:CEL140:V:7650428:7651599:-1 gene:F07C4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7650428-7652410(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07C4.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504981 F07C4.12 [Caenorhabditis elegans] gb|AAG24043.2| Hypothetical protein F07C4.12a [Caenorhabditis elegans] 0.0
blast AAY86287 Hypothetical protein F07C4.12b [Caenorhabditis elegans] pir||T28949 hypothetical protein F07C4.12 - Caenorhabditis elegans 0.0
blast CAE65401 Hypothetical protein CBG10352 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.0E-64
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.3E-44
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.8E-30
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003408 5 32-51,89-111,118-140,255-277,284-306
Sequence
Target Sequence 
>C. ELEGANS:189614_AT
agagacctgctaatcgaattctacaggagttgatttacgtgtcatttaaagaagacactg
ggaaagaatttgaggatacaagggacaaagtatacaagtattacacaagaggagtcgatc
caactgatgaaaaaaagttaaaagagaagctggttgagttcctcggggattttatattca
acggaggagctattgccacggcacaggcaagtttaaaatacggaaatgatgtttggtttt
atgtttttgattacacaaaccctgcaggatttggatgtcttgacgaaataatgcctttcg
tcgggcccactcattgcacagatcttcgatacttgcttggagaaggattatacagtgact
tcaagccagacgatactgactggaaaatgatcgacgaaatgacaactttgtacaccaatt
ttgcaaaatatggaaatccaaacggaaatgaaggagctggaagttgggagccttatacgt
tggttaaccccgagcgccatttcagaataggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGACCTGCTAATCGAATTCTACA 185 69 1085 Antisense
AAGCTGGTTGAGTTCCTCGGGGATT 577 141 1231 Antisense
GAGCTATTGCCACGGCACAGGCAAG 95 387 1271 Antisense
AACCCTGCAGGATTTGGATGTCTTG 419 145 1342 Antisense
GGATGTCTTGACGAAATAATGCCTT 42 513 1357 Antisense
CCCACTCATTGCACAGATCTTCGAT 241 259 1390 Antisense
ACAGATCTTCGATACTTGCTTGGAG 242 109 1402 Antisense
ACAGTGACTTCAAGCCAGACGATAC 267 107 1436 Antisense
GACAACTTTGTACACCAATTTTGCA 137 365 1485 Antisense
GAAGTTGGGAGCCTTATACGTTGGT 94 337 1544 Antisense
CCCGAGCGCCATTTCAGAATAGGAT 413 261 1573 Antisense
Sequence Source Affymetrix Proprietary Database