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[189613_s_at] EGF-like protein

Description W02C12.1 /REP_DB=WormBase Gene ID /WP=CE14412 /TR=P91526 /GB=AAB37995.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=EGF-like protein
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 12.2
(-3)
A 		152.2
(3)
A 		62.6
(-0.8)
A 		101.7
(0.8)
A 		140
B 26.8
(-3)
A 		181.8
(3)
A 		56
(-1.8)
A 		25.5
(-3)
A 		156
C 8.2
(-3)
A 		121
(3)
A 		88.7
(1.3)
A 		7.5
(-3)
A 		114
avr 15.7
(-3) 		151.7
(3) 		69.1
(-0.6) 		44.9
(-1.7) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 64
(-2)
A 		85.5
(-1.5)
A 		14.7
(-3)
A 		254.8
(1.9)
P 		307.4
(3)
P 		154.5
(-0.1)
A 		293
B 43.5
(-3)
A 		139.1
(-1)
A 		104.8
(-1.7)
A 		330.7
(3)
P 		309
(2.5)
P 		122.3
(-1.4)
P 		287
C 84.9
(-3)
A 		108.2
(-2.4)
A 		104.4
(-2.5)
A 		228.8
(0.7)
P 		319.8
(3)
P 		88.6
(-2.9)
A 		235
avr 64.1
(-3) 		110.9
(-1.9) 		74.6
(-2.7) 		271.4
(2) 		312.1
(3) 		121.8
(-1.6) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 4.4
(-3)
A 		33
(3)
A 		16.4
(-0.5)
A 		14.9
(-0.8)
A 		29
B 8.5
(-2.5)
A 		44.9
(3)
A 		13
(-1.8)
A 		5.4
(-3)
A 		40
C 2.7
(-2.7)
A 		34.8
(3)
A 		30.9
(2.3)
A 		1.3
(-3)
A 		34
avr 5.2
(-3) 		37.6
(3) 		20.1
(-0.2) 		7.2
(-2.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 11.8
(-2.4)
A 		30.4
(-1.2)
A 		3.2
(-3)
A 		64.6
(1.1)
P 		92.8
(3)
P 		37.6
(-0.7)
A 		90
B 15.1
(-3)
A 		46.3
(-1.3)
A 		25.4
(-2.4)
A 		87.6
(0.9)
P 		125.5
(3)
P 		45.6
(-1.3)
P 		110
C 31.5
(-2.6)
A 		33
(-2.5)
A 		26.6
(-3)
A 		46
(-1.5)
P 		103.5
(3)
P 		29.7
(-2.8)
A 		77
avr 19.5
(-2.9) 		36.6
(-1.8) 		18.4
(-3) 		66.1
(0.2) 		107.3
(3) 		37.6
(-1.7) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189613_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10623
Sequence Type Exemplar sequence
Representative Public ID W02C12.1 NCBI
Target Description W02C12.1 /REP_DB=WormBase Gene ID /WP=CE14412 /TR=P91526 /GB=AAB37995.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=EGF-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068059 NCBI Caenorhabditis elegans W02C12.1 (W02C12.1) mRNA, complete cds. 11/11 None
SNAP00000027729 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4008013:4013954:1 11/11 None
GENEFINDER00000027732 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4007949:4013954:1 11/11 None
W02C12.1 ENSEMBL cdna:known chromosome:CEL140:IV:4008013:4014189:1 gene:W02C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4008018-4013960(+) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like protein
Ensembl W02C12.1
Entrez Gene 177156 Entrez gene
SwissProt P91526 EMBL-EBI
WormBase CE14412 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37995 Hypothetical protein W02C12.1 [Caenorhabditis elegans] ref|NP_500460.1| W02C12.1 [Caenorhabditis elegans] 0.0
blast CAE61469 Hypothetical protein CBG05362 [Caenorhabditis briggsae] 0.0
blast XP_396277 PREDICTED: similar to GA21569-PA [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 8.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-11
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR003410 EMBL-EBI Hyalin 1.5E-28
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 1.8E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 8.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-11
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR003410 EMBL-EBI Hyalin 1.5E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500460.1 1 1241-1263
W02C12.1 1 1241-1263
SNAP00000027729 1 1241-1263
GENEFINDER00000027732 1 1279-1301
Sequence
Target Sequence 
>C. ELEGANS:189613_S_AT
gagctacgagtgtcggtgcaagccaggataccgtggaaatggaactcactgtacggatgc
ttgcaacgacttctgcttgaatgacggaatctgcaagaagaacaacatcggaaatgtaga
gtgcatctgtaaggatcactttagcggggatcggtgtgagctgagattccaagcttcaaa
taacaagctatggattgcaacggtcattgtcggagtcgtagtgatcggaatcatcattgt
gatcattgtgttcatgatctccttccggttcaatcatgtccaagacactaatgaaaagtc
gtcgacgttggcggatctgtctccaactgcgaataacatcctctacgggacaccgccagt
ttgcgaacctccacgcgcgttcggctactactacgaagacgacgacgtctacgagacaaa
atcacgcgaaatgatcggaagcggatcagaacgtcgtccgaccacgtcgacggttacctc
gatgggcggtgcaatgagccgagccatcgagcagcacaagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTACGAGTGTCGGTGCAAGCCA 270 387 3543 Antisense
GGAACTCACTGTACGGATGCTTGCA 284 529 3583 Antisense
GCTTGCAACGACTTCTGCTTGAATG 15 307 3601 Antisense
TCATTGTGTTCATGATCTCCTTCCG 484 619 3785 Antisense
TCCTTCCGGTTCAATCATGTCCAAG 64 593 3802 Antisense
AAAGTCGTCGACGTTGGCGGATCTG 178 121 3837 Antisense
GATCTGTCTCCAACTGCGAATAACA 322 419 3856 Antisense
GAATAACATCCTCTACGGGACACCG 245 323 3873 Antisense
CCACGTCGACGGTTACCTCGATGGG 493 271 4004 Antisense
TGGGCGGTGCAATGAGCCGAGCCAT 152 555 4025 Antisense
CCGAGCCATCGAGCAGCACAAGTAC 18 265 4041 Antisense
Sequence Source Affymetrix Proprietary Database