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[189611_at] NUM-1 like protein

Description C05C9.3 /REP_DB=WormBase Gene ID /WP=CE02963 /TR=Q17656 /GB=CAA91971.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=NUM-1 like protein
Cluster 6grp_total > 91      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 63.8
(3)
A 		42.8
(0.4)
A 		23.6
(-1.9)
A 		14.8
(-3)
A 		49
B 78.7
(3)
A 		54.7
(-0.8)
A 		41.5
(-2.8)
A 		40.3
(-3)
A 		38
C 45.4
(3)
A 		44.4
(2.8)
A 		11.8
(-2.2)
A 		6.6
(-3)
A 		39
avr 62.6
(3) 		47.3
(0.8) 		25.6
(-2.3) 		20.6
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 50.8
(1)
A 		70.1
(3)
A 		16.3
(-2.5)
A 		11.6
(-3)
A 		59.9
(2)
A 		12.9
(-2.9)
A 		59
B 40.2
(0.7)
A 		28.9
(-1.2)
A 		18.4
(-3)
A 		45.6
(1.6)
A 		28.8
(-1.2)
A 		53.5
(3)
A 		35
C 59.1
(1)
A 		17.1
(-2.6)
A 		38.8
(-0.8)
A 		82.1
(3)
A 		60
(1.1)
A 		13
(-3)
A 		69
avr 50
(3) 		38.7
(0.3) 		24.5
(-3) 		46.4
(2.2) 		49.6
(2.9) 		26.5
(-2.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 23.2
(3)
A 		9.3
(-1)
A 		6.2
(-1.9)
A 		2.2
(-3)
A 		21
B 25.1
(3)
A 		13.5
(-1.2)
A 		9.6
(-2.6)
A 		8.6
(-3)
A 		17
C 15
(3)
A 		12.8
(2.1)
A 		4.1
(-1.7)
A 		1.1
(-3)
A 		14
avr 21.1
(3) 		11.9
(-0.2) 		6.6
(-2.1) 		4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.4
(-1.2)
A 		24.9
(3)
A 		3.5
(-2.8)
A 		2.9
(-3)
A 		18.1
(1.1)
A 		3.1
(-2.9)
A 		22
B 14
(0.7)
A 		9.6
(-1)
A 		4.5
(-3)
A 		12.1
(-0)
A 		11.7
(-0.2)
A 		19.9
(3)
A 		15
C 21.9
(3)
A 		5.2
(-2.7)
A 		9.9
(-1.1)
A 		16.5
(1.1)
A 		19.4
(2.1)
A 		4.4
(-3)
A 		18
avr 15.1
(2.3) 		13.2
(1.2) 		6
(-3) 		10.5
(-0.4) 		16.4
(3) 		9.1
(-1.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16779
Sequence Type Exemplar sequence
Representative Public ID C05C9.3 NCBI
Target Description C05C9.3 /REP_DB=WormBase Gene ID /WP=CE02963 /TR=Q17656 /GB=CAA91971.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=NUM-1 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077460 NCBI Caenorhabditis elegans C05C9.3 (C05C9.3) mRNA, complete cds. 11/11 None
SNAP00000024335 ENSEMBL cdna:SNAP chromosome:CEL140:X:11142976:11145252:-1 11/11 None
GENEFINDER00000024345 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11142976:11152734:-1 11/11 None
C05C9.3 ENSEMBL cdna:known chromosome:CEL140:X:11143296:11152734:-1 gene:C05C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11143295-11152734(-) 100.0 100.0
Public Domain and Genome References
Gene Title NUM-1 like protein
Ensembl C05C9.3
Entrez Gene 182248 Entrez gene
SwissProt Q17656 EMBL-EBI
WormBase CE02963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91971 Hypothetical protein C05C9.3 [Caenorhabditis elegans] ref|NP_509861.1| C05C9.3 [Caenorhabditis elegans] 0.0
blast CAA91971 Hypothetical protein C05C9.3 [Caenorhabditis elegans] ref|NP_509861.1| C05C9.3 [Caenorhabditis elegans] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:189611_AT
gcaccaccaacagattcgacatcatcaaatgcttaaacaggaacaacgtcaaaatcacaa
cccaatgcatcaaattgaacacttccagcaacatcaattagtaaataaagttcgtccaca
ctaccaacaacaaggtgaaatgaaacgacaagatggtatgcatcagatgcagaatcaact
tcaccatcatcaaaatttccaattcaacagtgggcagcaggcaacacaagtccatgaaca
acaacaaaatcagaatcaccatgtgcgccaagctgttcaagaagaagtttttcagagttt
tccgcgtcatgacgtacagcgacatattcatgggcaaacgaattatcaacagaatcagcg
tcaacattcccaacagcaggtgtataaatttcatatgcaaccacaacttccaattcaacc
agtaccaaatcaagtccaacaacctaattttaataatccgaatcgagatttccaatatcc
aaatcacaatcatcaacacgttcaatatcagttacaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCACCAACAGATTCGACATCAT 18 315 3111 Antisense
TTCGTCCACACTACCAACAACAAGG 204 695 3221 Antisense
ATGCAGAATCAACTTCACCATCATC 686 43 3277 Antisense
GGCAGCAGGCAACACAAGTCCATGA 64 535 3323 Antisense
TCAGAATCACCATGTGCGCCAAGCT 661 623 3360 Antisense
TTTTCAGAGTTTTCCGCGTCATGAC 37 677 3399 Antisense
GCGTCATGACGTACAGCGACATATT 299 291 3414 Antisense
GTCAACATTCCCAACAGCAGGTGTA 28 465 3470 Antisense
TATGCAACCACAACTTCCAATTCAA 475 653 3504 Antisense
AAATCACAATCATCAACACGTTCAA 522 117 3591 Antisense
ACACGTTCAATATCAGTTACACCAA 263 105 3606 Antisense
Sequence Source Affymetrix Proprietary Database