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[189608_at]

Description F46F2.2 /REP_DB=WormBase Gene ID /WP=CE05879 /TR=SW:Q20471 /GB=CAA93775.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=casein Kinase I
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 48      6grp_cgc > 03      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 421.1
(-2.4)
P 		429.6
(-2.2)
P 		687.7
(3)
P 		389.4
(-3)
P 		298
B 337.1
(-3)
P 		593.7
(2.7)
P 		607.1
(3)
P 		419.4
(-1.2)
P 		270
C 374.7
(-1.8)
P 		583.1
(1.9)
P 		646.1
(3)
P 		307.2
(-3)
P 		339
avr 377.6
(-2.9) 		535.5
(0.6) 		647
(3) 		372
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 416.6
(3)
P 		382.8
(2)
P 		211.6
(-3)
P 		222.8
(-2.7)
P 		369.6
(1.6)
P 		359.9
(1.3)
P 		205
B 353.1
(1.4)
P 		359.8
(1.6)
P 		209.7
(-3)
P 		405.8
(3)
P 		279.8
(-0.9)
P 		279.8
(-0.9)
P 		196
C 548.2
(3)
P 		382.6
(-0.3)
P 		322.3
(-1.6)
P 		251
(-3)
P 		395
(-0.1)
P 		256.8
(-2.9)
P 		297
avr 439.3
(3) 		375.1
(1) 		247.9
(-3) 		293.2
(-1.6) 		348.1
(0.1) 		298.8
(-1.4) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 153.3
(1.7)
P 		93.3
(-1.2)
P 		179.8
(3)
P 		57
(-3)
P 		123
B 107.5
(-1.1)
P 		146.6
(3)
P 		140.7
(2.4)
P 		89.4
(-3)
P 		57
C 124
(-0.5)
P 		167.6
(1)
P 		225.2
(3)
P 		51.8
(-3)
P 		173
avr 128.3
(0.2) 		135.8
(0.6) 		181.9
(3) 		66.1
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 76.8
(-1)
P 		136.2
(3)
P 		46.1
(-3)
P 		56.5
(-2.3)
P 		111.5
(1.4)
P 		87.6
(-0.2)
P 		90
B 122.9
(3)
P 		119.8
(2.7)
P 		50.9
(-3)
P 		107.5
(1.7)
P 		113.7
(2.2)
P 		104.3
(1.5)
P 		72
C 203.2
(3)
P 		116.8
(-0.4)
P 		82
(-1.8)
P 		50.5
(-3)
P 		127.8
(0)
P 		86
(-1.6)
P 		153
avr 134.3
(3) 		124.3
(2.2) 		59.7
(-3) 		71.5
(-2.1) 		117.7
(1.7) 		92.6
(-0.4) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18052
Sequence Type Exemplar sequence
Representative Public ID F46F2.2 NCBI
Target Description F46F2.2 /REP_DB=WormBase Gene ID /WP=CE05879 /TR=SW:Q20471 /GB=CAA93775.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=casein Kinase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078132(11), NM_001029498(11), NM_182447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078132 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 A 
NM_001029498 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 None
NM_182447 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 None
F46F2.2c ENSEMBL cdna:known chromosome:CEL140:X:15269137:15273600:-1 gene:F46F2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029499 5/11 Cross Hyb Matching Probes None
SNAP00000014644 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014645 6/11 Cross Hyb Matching Probes None
F46F2.2a 5/11 Cross Hyb Matching Probes A 
F46F2.2b 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181620 4 3 NM_001029498 175072_s_at (11), 189608_at (11)
NM_001029499 175072_s_at (11)
NM_078132 175072_s_at (11), 189608_at (11)
NM_182447 189608_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15269281-15273600(-) 98.79 100.0
Public Domain and Genome References
Ensembl F46F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93775 Hypothetical protein F46F2.2a [Caenorhabditis elegans] ref|NP_510533.3| protein KINase family member (kin-20) [Caenorhabditis elegans] gb|AAW21316.1| casein kinase I epsilon/delta kin-20C [Caenorhabditis elegans] gb|AAW21314.1| casein kinase I epsilon/delta kin-20A [Caenorhabditis elegans] 0.0
blast CAI79241 Hypothetical protein F46F2.2d [Caenorhabditis elegans] ref|NP_001024670.1| protein KINase family member (kin-20) [Caenorhabditis elegans] 0.0
blast CAH60762 Hypothetical protein F46F2.2c [Caenorhabditis elegans] ref|NP_001024669.1| protein KINase family member (kin-20) [Caenorhabditis elegans] 0.0
blast CAD56585 Hypothetical protein F46F2.2b [Caenorhabditis elegans] ref|NP_872247.2| protein KINase family member (kin-20) [Caenorhabditis elegans] gb|AAW21315.1| casein kinase I epsilon/delta kin-20B [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:189608_AT
cattgagtctcttggctacgtgtttatgtactttaatcgtggaactctcccgtggcaggg
actaaaagctgtcacaaagcggcaaaagtatgagctgatatcagagaagaagatttcgac
gcgagttgacgacctgtgcgctggctaccccgaggcgtttgcccagtacctcaactattg
ccgtagtcttggatttgaagagcagcctgattatggttatttgagaaatttgttccgcac
gttattccatcggcaacagttttgctatgactacgtgtttgactggaatacatacaacaa
gcggtaccaaatcaacgtcgacattaattgtatcatctccttttcaagtttgtgctccat
ttcctctttaatatctcatttcttacccccgttttgtgatactattcatgtttcatttgc
ctcttccttttctcctccttcctgtctctttttttcctctgtgtttttttgttgttttct
taaaaacaacaacaacaacaacaacctgtttctagtatttcacttgcaacgttttcttcc
atttctctctgttcattttcctcgctctgtcattgatctttgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGAGTCTCTTGGCTACGTGTTT 56 215 1131 Antisense
CTTTAATCGTGGAACTCTCCCGTGG 707 221 1161 Antisense
CGACGCGAGTTGACGACCTGTGCGC 121 251 1247 Antisense
GTACCTCAACTATTGCCGTAGTCTT 660 457 1296 Antisense
TTCCGCACGTTATTCCATCGGCAAC 415 697 1363 Antisense
AGCGGTACCAAATCAACGTCGACAT 213 73 1430 Antisense
TTTTCAAGTTTGTGCTCCATTTCCT 509 675 1471 Antisense
TACCCCCGTTTTGTGATACTATTCA 341 89 1514 Antisense
TATTCATGTTTCATTTGCCTCTTCC 22 665 1533 Antisense
TTTCACTTGCAACGTTTTCTTCCAT 445 673 1648 Antisense
CTCGCTCTGTCATTGATCTTTGTCT 579 233 1691 Antisense
Sequence Source Affymetrix Proprietary Database