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[189601_at] olfactory receptor

Description C51E3.5 /REP_DB=WormBase Gene ID /WP=CE08938 /TR=Q18767 /GB=CAB01637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor
Cluster 6grp_total > 21      4grp_total > 04      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 55.6
(-1.5)
P 		43.1
(-3)
A 		43.5
(-3)
A 		93.2
(3)
A 		50
B 60.5
(-0.3)
P 		52.5
(-1.8)
A 		46
(-3)
A 		78.6
(3)
P 		33
C 62.5
(-1.5)
A 		44.7
(-2.6)
A 		39.1
(-3)
A 		134.6
(3)
P 		96
avr 59.5
(-1.3) 		46.8
(-2.6) 		42.9
(-3) 		102.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 49.2
(-3)
A 		63.9
(-0.7)
A 		87.4
(3)
P 		57.7
(-1.7)
A 		61.3
(-1.1)
A 		53.1
(-2.4)
A 		38
B 56.9
(1.4)
P 		66.5
(2.6)
M 		68.5
(2.9)
P 		22.9
(-3)
A 		69.4
(3)
A 		26.4
(-2.5)
A 		47
C 13.5
(-2.6)
A 		62.6
(3)
P 		41.6
(0.6)
A 		51.8
(1.8)
A 		9.7
(-3)
A 		16
(-2.3)
A 		53
avr 39.9
(-1.6) 		64.3
(2.7) 		65.8
(3) 		44.1
(-0.8) 		46.8
(-0.4) 		31.8
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 20.2
(3)
P 		9.4
(-3)
A 		11.4
(-1.9)
A 		13.6
(-0.7)
A 		11
B 19.3
(3)
P 		13
(-1.4)
A 		10.7
(-3)
A 		16.7
(1.2)
P 		9
C 20.7
(1.8)
A 		12.8
(-3)
A 		13.6
(-2.5)
A 		22.7
(3)
P 		10
avr 20.1
(3) 		11.7
(-3) 		11.9
(-2.9) 		17.7
(1.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.1
(-3)
A 		22.7
(3)
A 		19
(1.4)
P 		14.6
(-0.6)
A 		18.5
(1.1)
A 		12.9
(-1.3)
A 		14
B 19.8
(0.7)
P 		22.1
(1.3)
M 		16.6
(-0.1)
P 		6.1
(-3)
A 		28.2
(3)
A 		9.8
(-2)
A 		22
C 5
(-2.3)
A 		19.1
(3)
P 		10.6
(-0.2)
A 		10.4
(-0.3)
A 		3.1
(-3)
A 		5.4
(-2.1)
A 		16
avr 11.3
(-2) 		21.3
(3) 		15.4
(0) 		10.4
(-2.5) 		16.6
(0.6) 		9.4
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11368
Sequence Type Exemplar sequence
Representative Public ID C51E3.5 NCBI
Target Description C51E3.5 /REP_DB=WormBase Gene ID /WP=CE08938 /TR=Q18767 /GB=CAB01637.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=olfactory receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073211(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073211 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-30) (srsx-30) mRNA, complete cds. 9/11 None
SNAP00000031202 ENSEMBL cdna:SNAP chromosome:CEL140:V:10161414:10162056:1 9/11 None
GENEFINDER00000031205 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10155164:10162878:1 10/11 None
C51E3.5 ENSEMBL cdna:known chromosome:CEL140:V:10161414:10162878:1 gene:C51E3.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10160619-10161701(+) 100.0 100.0
Public Domain and Genome References
Gene Title olfactory receptor
Gene Symbol srsx-30
Ensembl C51E3.5
Entrez Gene 183707 Entrez gene
SwissProt Q18767 EMBL-EBI
WormBase CE37815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01640 Hypothetical protein C51E3.3 [Caenorhabditis elegans] ref|NP_505610.2| Serpentine Receptor, class SX family member (srsx-28) [Caenorhabditis elegans] 1.0E-173
blast CAB01637 Hypothetical protein C51E3.5 [Caenorhabditis elegans] ref|NP_505612.2| Serpentine Receptor, class SX family member (srsx-30) [Caenorhabditis elegans] 1.0E-171
blast CAB01637 Hypothetical protein C51E3.5 [Caenorhabditis elegans] ref|NP_505612.2| Serpentine Receptor, class SX family member (srsx-30) [Caenorhabditis elegans] 1.0E-170
blast CAE64745 Hypothetical protein CBG09533 [Caenorhabditis briggsae] 1.0E-154
blast CAE64745 Hypothetical protein CBG09533 [Caenorhabditis briggsae] 1.0E-153
blast CAB01637 Hypothetical protein C51E3.5 [Caenorhabditis elegans] ref|NP_505612.2| Serpentine Receptor, class SX family member (srsx-30) [Caenorhabditis elegans] 3.0E-83
blast CAE64745 Hypothetical protein CBG09533 [Caenorhabditis briggsae] 4.0E-73
blast CAB01638 Hypothetical protein C51E3.1 [Caenorhabditis elegans] ref|NP_505608.2| Serpentine Receptor, class SX family member (srsx-26) [Caenorhabditis elegans] 4.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505612.2 7 15-37,44-66,81-103,123-145,168-190,202-221,241-263
C51E3.5 7 15-37,44-66,81-103,123-145,168-190,202-221,241-263
SNAP00000031202 4 15-37,44-66,81-103,123-145
GENEFINDER00000031205 20 10-32,44-66,81-103,124-146,172-194,206-228,243-265,350-372,387-409,430-452,478-500,512-534,549-571,617-639,649-671,684-706,726-748,772-794,809-831,844-866
Sequence
Target Sequence 
>C. ELEGANS:189601_AT
tcatccgtacatcatgttcccagataaattatttattgagagattctagagccataaatg
tggcttgtcaagccatgtttgaaacgttcaataaaatcaaatttcccggcagagtgaaaa
aaatcaatgaaatgtttggtaacgtgcatccatggttgataccactggcatttttctacc
taattatcatccccgttggaatcttcagcaatgtgatcatgatcatttgcttctttgtca
atccacgcctcagatctccatttcacattctcctcacgctaacttgtctcgctgacggaa
ttcatgtttgtggccagattattttcgtgtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCGTACATCATGTTCCCAGAT 117 623 20 Antisense
TAAAATCAAATTTCCCGGCAGAGTG 58 639 111 Antisense
GTAACGTGCATCCATGGTTGATACC 503 461 158 Antisense
GATACCACTGGCATTTTTCTACCTA 82 425 177 Antisense
TACCTAATTATCATCCCCGTTGGAA 534 639 196 Antisense
ATCCCCGTTGGAATCTTCAGCAATG 270 39 208 Antisense
GATCATGATCATTTGCTTCTTTGTC 156 421 234 Antisense
TCATTTGCTTCTTTGTCAATCCACG 657 619 242 Antisense
GCTAACTTGTCTCGCTGACGGAATT 194 303 297 Antisense
GACGGAATTCATGTTTGTGGCCAGA 566 375 313 Antisense
GTGGCCAGATTATTTTCGTGTTTCA 478 491 329 Antisense
Sequence Source Affymetrix Proprietary Database