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[189598_s_at]

Description ZC376.7 /REP_DB=WormBase Gene ID /WP=CE15205 /TR=Q23272 /GB=CAB00883.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA binding domain
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 83      6grp_total > 37      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 601.3
(-2)
P 		617.4
(-1.7)
P 		548.9
(-3)
P 		863.9
(3)
P 		315
B 543.8
(-3)
P 		554.3
(-2.8)
P 		575.6
(-2.4)
P 		853.6
(3)
P 		310
C 539
(-3)
P 		681.5
(0)
P 		624.3
(-1.2)
P 		822.2
(3)
P 		283
avr 561.4
(-3) 		617.7
(-1.8) 		582.9
(-2.5) 		846.6
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 535.5
(2.1)
P 		545.6
(2.3)
P 		328.9
(-2.3)
P 		298.1
(-3)
P 		361.7
(-1.6)
P 		576.8
(3)
P 		279
B 468.5
(1)
P 		536.3
(3)
P 		392.4
(-1.3)
P 		335.3
(-3)
P 		345.4
(-2.7)
P 		492.6
(1.7)
P 		201
C 585.4
(3)
P 		550.5
(2.3)
P 		399.5
(-0.8)
P 		292
(-3)
P 		342.1
(-2)
P 		448.4
(0.2)
P 		293
avr 529.8
(2.6) 		544.1
(3) 		373.6
(-1.3) 		308.5
(-3) 		349.7
(-2) 		505.9
(2) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 218.9
(3)
P 		134
(-2.5)
P 		143.5
(-1.9)
P 		126.5
(-3)
P 		92
B 173.4
(1.9)
P 		136.9
(-2.6)
P 		133.4
(-3)
P 		181.9
(3)
P 		49
C 178.4
(0)
P 		195.9
(1.4)
P 		217.6
(3)
P 		138.6
(-3)
P 		79
avr 190.2
(3) 		155.6
(-2) 		164.8
(-0.7) 		149
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 98.7
(-1.7)
P 		194.1
(3)
P 		71.6
(-3)
P 		75.6
(-2.8)
P 		109.1
(-1.2)
P 		140.4
(0.4)
P 		123
B 163
(1.7)
P 		178.5
(2.7)
P 		95.3
(-2.6)
P 		88.8
(-3)
P 		140.4
(0.3)
P 		183.7
(3)
P 		95
C 217
(3)
P 		168
(1.1)
P 		101.7
(-1.4)
P 		58.7
(-3)
P 		110.7
(-1)
P 		150.1
(0.5)
P 		158
avr 159.6
(1.8) 		180.2
(3) 		89.5
(-2.1) 		74.4
(-3) 		120.1
(-0.4) 		158.1
(1.7) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189598_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12595
Sequence Type Exemplar sequence
Representative Public ID ZC376.7 NCBI
Target Description ZC376.7 /REP_DB=WormBase Gene ID /WP=CE15205 /TR=Q23272 /GB=CAB00883.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074114(11), NM_182360(11), NM_001029131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074114 NCBI Caenorhabditis elegans ZC376.7a (ZC376.7) mRNA, complete cds. 11/11 None
NM_182360 NCBI Caenorhabditis elegans ZC376.7b (ZC376.7) mRNA, complete cds. 11/11 None
NM_001029131 NCBI Caenorhabditis elegans ZC376.7c (ZC376.7) mRNA, complete cds. 11/11 None
SNAP00000015360 ENSEMBL cdna:SNAP chromosome:CEL140:V:14197071:14200009:1 11/11 None
GENEFINDER00000015366 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14197071:14200009:1 11/11 None
ZC376.7a.2 ENSEMBL cdna:known chromosome:CEL140:V:14196273:14200009:1 gene:ZC376.7 11/11 None
ZC376.7b.2 ENSEMBL cdna:known chromosome:CEL140:V:14196298:14200009:1 gene:ZC376.7 11/11 None
ZC376.7b.1 ENSEMBL cdna:known chromosome:CEL140:V:14197034:14200266:1 gene:ZC376.7 11/11 None
ZC376.7a.1 ENSEMBL cdna:known chromosome:CEL140:V:14197034:14200009:1 gene:ZC376.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14197070-14200009(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC376.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00883 Hypothetical protein ZC376.7a [Caenorhabditis elegans] ref|NP_506515.1| ZC376.7a [Caenorhabditis elegans] 0.0
blast CAD54177 Hypothetical protein ZC376.7b [Caenorhabditis elegans] ref|NP_872160.1| ZC376.7b [Caenorhabditis elegans] 0.0
blast CAI91180 Hypothetical protein ZC376.7c [Caenorhabditis elegans] ref|NP_001024302.1| ZC376.7c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189598_S_AT
ctcttcatcatcagcgtcgaatcttttgagactgtcaactccatcagctccaatgcagca
agaacatcgagcacctgtcagaatgcaccatgatgttgatcttttctcttctggacctct
tctttgtgttccgaaacaagaagacgttttcgacgactttatccagcagagagatgatga
cgatgaagactatattccagcatctgaagccagaagaacaagttcacgtctcaatcggaa
atctgctacgccaacttatcttcggcgtcgtgattctgaacgttcgtggacgccagcttc
cgatgactattttccagaagaacatcagaagtttaagaaacgtggagttgttctgaagcc
ttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCATCATCAGCGTCGAATCTT 696 229 903 Antisense
TTGAGACTGTCAACTCCATCAGCTC 149 705 928 Antisense
ACTCCATCAGCTCCAATGCAGCAAG 701 97 940 Antisense
CGAGCACCTGTCAGAATGCACCATG 568 249 970 Antisense
TGATGTTGATCTTTTCTCTTCTGGA 386 567 993 Antisense
GTTTTCGACGACTTTATCCAGCAGA 199 449 1048 Antisense
TCACGTCTCAATCGGAAATCTGCTA 339 625 1126 Antisense
AAATCTGCTACGCCAACTTATCTTC 155 119 1141 Antisense
TATCTTCGGCGTCGTGATTCTGAAC 231 655 1159 Antisense
GATTCTGAACGTTCGTGGACGCCAG 255 431 1174 Antisense
ACGTGGAGTTGTTCTGAAGCCTTCA 190 95 1242 Antisense
Sequence Source Affymetrix Proprietary Database