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[189597_s_at] acyl-CoA oxidase I

Description F59F4.1 /REP_DB=WormBase Gene ID /WP=CE11546 /TR=Q93839 /GB=CAB03158.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA oxidase I
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 20      4grp_high_8_8 > 39      6grp_highest_nonorm > 98      6grp_total > 67      4grp_total > 40      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 503
1 2 3 4 range
A 630.5
(-3)
P 		782.9
(0.5)
P 		893
(3)
P 		828.7
(1.5)
P 		263
B 877.4
(-1.9)
P 		887.6
(-1.7)
P 		1133.3
(3)
P 		822
(-3)
P 		311
C 704.2
(-2.8)
P 		698.3
(-3)
P 		879.2
(2.4)
P 		899.9
(3)
P 		202
avr 737.4
(-3) 		789.6
(-1.6) 		968.5
(3) 		850.2
(-0.1) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1636
1 2 3 4 5 6 range
A 1056.7
(-0.8)
P 		686.7
(-3)
P 		836.5
(-2.1)
P 		865.9
(-1.9)
P 		781.2
(-2.4)
P 		1682.7
(3)
P 		996
B 980.9
(-1.8)
P 		800.5
(-2.7)
P 		743.1
(-3)
P 		1060.5
(-1.3)
P 		805.5
(-2.7)
P 		1891.2
(3)
P 		1148
C 805.4
(-2.3)
P 		773.7
(-2.4)
P 		785.9
(-2.4)
P 		1310.3
(-0.5)
P 		618.3
(-3)
P 		2253.9
(3)
P 		1636
avr 947.7
(-1.9) 		753.6
(-2.9) 		788.5
(-2.7) 		1078.9
(-1.3) 		735
(-3) 		1942.6
(3) 		1208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 229.6
(2.8)
P 		170
(-0.4)
P 		233.5
(3)
P 		121.3
(-3)
P 		112
B 279.8
(3)
P 		219.2
(-0.5)
P 		262.6
(2)
P 		175.2
(-3)
P 		105
C 233.1
(0.2)
P 		200.8
(-1.1)
P 		306.4
(3)
P 		151.7
(-3)
P 		155
avr 247.5
(2) 		196.7
(-0.6) 		267.5
(3) 		149.4
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 194.8
(-2.7)
P 		244.2
(-1.4)
P 		182.2
(-3)
P 		219.6
(-2)
P 		235.7
(-1.6)
P 		409.7
(3)
P 		228
B 341.3
(-1.2)
P 		266.4
(-2)
P 		180.4
(-3)
P 		280.9
(-1.9)
P 		327.2
(-1.3)
P 		705.2
(3)
P 		525
C 298.5
(-1.9)
P 		236.1
(-2.6)
P 		200
(-3)
P 		263.5
(-2.3)
P 		200.1
(-3)
P 		754.5
(3)
P 		555
avr 278.2
(-1.8) 		248.9
(-2.2) 		187.5
(-3) 		254.7
(-2.1) 		254.3
(-2.1) 		623.1
(3) 		436
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189597_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18012
Sequence Type Exemplar sequence
Representative Public ID F59F4.1 NCBI
Target Description F59F4.1 /REP_DB=WormBase Gene ID /WP=CE11546 /TR=Q93839 /GB=CAB03158.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA oxidase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078202 NCBI Caenorhabditis elegans F59F4.1 (F59F4.1) mRNA, complete cds. 11/11 None
SNAP00000031687 ENSEMBL cdna:SNAP chromosome:CEL140:X:15834039:15838442:-1 11/11 None
GENEFINDER00000031695 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15834039:15838442:-1 11/11 None
F59F4.1.2 ENSEMBL cdna:known chromosome:CEL140:X:15833742:15838463:-1 gene:F59F4.1 11/11 None
F59F4.1.1 ENSEMBL cdna:known chromosome:CEL140:X:15833969:15838463:-1 gene:F59F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15834038-15838442(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-CoA oxidase I
Ensembl F59F4.1
Entrez Gene 181668 Entrez gene
SwissProt Q93839 EMBL-EBI
WormBase CE11546 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17476_AT acyl-CoA oxidase, putative at
ATH1-121501:265843_AT acyl-CoA oxidase, putative at
CANINE:1592168_AT similar to acyl-Coenzyme A oxidase isoform a cfa
CANINE_2:CFA.21097.1.S1_S_AT similar to acyl-Coenzyme A oxidase isoform a cfa
CANINE_2:CFAAFFX.8412.1.S1_S_AT similar to acyl-Coenzyme A oxidase isoform a cfa
CANINE_2:CFAAFFX.8417.1.S1_S_AT similar to acyl-Coenzyme A oxidase isoform a cfa
DROSOPHILA_2:1624756_AT dm
DROSGENOME1:152121_S_AT dm
CHICKEN:GGA.13486.1.S1_S_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGA.2560.1.S1_S_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGA.2560.2.S1_S_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGA.8007.1.S1_S_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGAAFFX.11677.1.S1_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGAAFFX.12975.1.S1_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
CHICKEN:GGAAFFX.1433.3.S1_S_AT acyl-Coenzyme A oxidase 1, palmitoyl gga
HG-U133A:209601_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:209601_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A_2:209601_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:213501_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A_2:213501_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A:213501_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95AV2:40460_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A:209600_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:209600_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-FOCUS:209600_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A_2:209600_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:207656_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A:207656_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133A_2:207656_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBC:RC_F04944_S_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HUGENEFL:S69189_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
U133_X3P:G6031153_3P_A_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
U133_X3P:HS.167835.3.S1_3P_A_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95AV2:40459_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95E:67690_AT acyl-Coenzyme A oxidase 1, palmitoyl hs
U133_X3P:HS.100009.1.S1_3P_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBB:RC_W74644_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBB:RC_W44745_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
U133_X3P:HS2.157049.1.A1_3P_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
U133_X3P:HS.293649.0.A1_3P_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:1556923_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:226396_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133B:226396_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133_PLUS_2:227962_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U133B:227962_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95B:48516_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95C:62771_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95D:84462_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HG-U95B:50941_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBA:H72388_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBB:RC_R96356_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
HU35KSUBC:RC_D20433_R_AT Acyl-Coenzyme A oxidase 1, palmitoyl hs
MU11KSUBA:AF006688_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MU11KSUBA:AA242340_S_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MG-U74AV2:101515_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MG-U74AV2:162158_R_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOE430A:1416409_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOUSE430A_2:1416409_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOUSE430_2:1416409_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOE430A:1416408_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOUSE430A_2:1416408_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MOUSE430_2:1416408_AT acyl-Coenzyme A oxidase 1, palmitoyl mm
MU19KSUBC:TC40116_S_AT Acyl-Coenzyme A oxidase 1, palmitoyl (Acox1), mRNA mm
RT-U34:J02752_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
RG-U34A:J02752_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
RG-U34A:RC_AA799489_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
RG-U34A:RC_AA799489_G_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
RAE230A:1367680_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
RAT230_2:1367680_AT acyl-Coenzyme A oxidase 1, palmitoyl rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6635 fatty acid beta-oxidation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3997 acyl-CoA oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03158 Hypothetical protein F59F4.1 [Caenorhabditis elegans] ref|NP_510603.1| F59F4.1 [Caenorhabditis elegans] 0.0
blast CAE69737 Hypothetical protein CBG16008 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-83
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.1E-67
Pfam IPR002655 EMBL-EBI Acyl-CoA oxidase 5.1E-67
Sequence
Target Sequence 
>C. ELEGANS:189597_S_AT
gcctggaaggaaaacctcgcgcttaacaactcaccaccactacacagatgctgatatcgt
tgaagatcttgagcacgttgctcgcaaacaagtattccgagcctacgaccgcctgaaaaa
ggctcaggagcatcttcgtccggaagatgcttggaactcggtttctgtggaacttgctaa
agcttcgagatggcacgttcgtctgtatctcgtgaagaacttattgcacaaagtttctat
tgctcctcaggatttgaagattgtgctcttcgatgttgctcggctgtatgcttatgacat
cattacatcatcaattggagcatttttggaggatggctacatgagctctaatcagatgaa
tgaagttaaagaaggtatttataaatgcttgtccaatatgcgtccaaatgcggttggcct
agttgactgttgggattatgacgataaagagctcaaatcagttttgggaagacgtgacgg
aaacgtgtaccctgctcttctccagtgggctcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGGAAGGAAAACCTCGCGCTTA 372 281 1416 Antisense
CACCACCACTACACAGATGCTGATA 176 203 1447 Antisense
AAAGGCTCAGGAGCATCTTCGTCCG 475 121 1533 Antisense
GGAACTCGGTTTCTGTGGAACTTGC 27 529 1568 Antisense
GGCACGTTCGTCTGTATCTCGTGAA 638 535 1607 Antisense
AAGTTTCTATTGCTCCTCAGGATTT 489 155 1646 Antisense
AAGATTGTGCTCTTCGATGTTGCTC 87 157 1672 Antisense
GATGTTGCTCGGCTGTATGCTTATG 206 411 1687 Antisense
ATGCTTGTCCAATATGCGTCCAAAT 37 41 1800 Antisense
AAATGCGGTTGGCCTAGTTGACTGT 274 119 1821 Antisense
TGCTCTTCTCCAGTGGGCTCAAAAT 207 581 1908 Antisense
Sequence Source Affymetrix Proprietary Database