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[189595_s_at] aspartyl protease

Description K10C2.3 /REP_DB=WormBase Gene ID /WP=CE04749 /TR=Q94271 /GB=AAK39258.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 02      6grp_total > 05      4grp_total > 54      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13993
1 2 3 4 range
A 13084.7
(3)
P 		5914.4
(-0.3)
P 		4579.9
(-1)
P 		186.7
(-3)
P 		12898
B 14141.1
(3)
P 		5548.7
(-0.7)
P 		4419.3
(-1.2)
P 		164.6
(-3)
P 		13977
C 12024.5
(3)
P 		5322.2
(-0.4)
P 		4164.5
(-1)
P 		148
(-3)
P 		11877
avr 13083.4
(3) 		5595.1
(-0.5) 		4387.9
(-1) 		166.4
(-3) 		12917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4121
1 2 3 4 5 6 range
A 5014.9
(3)
P 		2607
(-0.5)
P 		1646.3
(-1.9)
P 		1399.7
(-2.3)
P 		2050.2
(-1.3)
P 		894
(-3)
P 		4121
B 4447.2
(3)
P 		2781.8
(0.1)
P 		1300
(-2.5)
P 		1646.6
(-1.9)
P 		1770.9
(-1.7)
P 		1010.3
(-3)
P 		3437
C 3422.2
(3)
P 		2750.9
(1.2)
P 		1419.1
(-2.3)
P 		1310.6
(-2.6)
P 		1858.2
(-1.2)
P 		1166.8
(-3)
P 		2255
avr 4294.8
(3) 		2713.2
(0.1) 		1455.1
(-2.2) 		1452.3
(-2.2) 		1893.1
(-1.4) 		1023.7
(-3) 		3271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4739
1 2 3 4 range
A 4764.1
(3)
P 		1283.9
(-1.4)
P 		1197.3
(-1.5)
P 		27.3
(-3)
P 		4737
B 4509.5
(3)
P 		1370.4
(-1.2)
P 		1024.1
(-1.7)
P 		35.1
(-3)
P 		4474
C 3980.4
(3)
P 		1530.2
(-0.7)
P 		1451.4
(-0.8)
P 		25
(-3)
P 		3955
avr 4418
(3) 		1394.8
(-1.1) 		1224.3
(-1.4) 		29.1
(-3) 		4389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1330
1 2 3 4 5 6 range
A 924.5
(3)
P 		927.2
(3)
P 		358.5
(-1.8)
P 		355
(-1.8)
P 		618.6
(0.4)
P 		217.7
(-3)
P 		710
B 1547.4
(3)
P 		925.9
(-0)
P 		315.7
(-3)
P 		436.1
(-2.4)
P 		719.5
(-1)
P 		376.7
(-2.7)
P 		1232
C 1268.5
(3)
P 		839.4
(0.4)
P 		361.2
(-2.4)
P 		263.6
(-3)
P 		601.3
(-1)
P 		390.6
(-2.2)
P 		1005
avr 1246.8
(3) 		897.5
(0.7) 		345.1
(-2.9) 		351.6
(-2.8) 		646.5
(-0.9) 		328.3
(-3) 		919
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189595_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16431
Sequence Type Exemplar sequence
Representative Public ID K10C2.3 NCBI
Target Description K10C2.3 /REP_DB=WormBase Gene ID /WP=CE04749 /TR=Q94271 /GB=AAK39258.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076681 NCBI Caenorhabditis elegans K10C2.3 (K10C2.3) mRNA, complete cds. 11/11 None
SNAP00000032619 ENSEMBL cdna:SNAP chromosome:CEL140:X:6444187:6446561:-1 11/11 None
GENEFINDER00000032626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6444187:6445599:-1 11/11 None
K10C2.3 ENSEMBL cdna:known chromosome:CEL140:X:6444183:6446693:-1 gene:K10C2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6444186-6446693(-) 100.0 100.0
Public Domain and Genome References
Gene Title aspartyl protease
Ensembl K10C2.3
Entrez Gene 180917 Entrez gene
SwissProt Q94271 EMBL-EBI
WormBase CE04749 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39258 Hypothetical protein K10C2.3 [Caenorhabditis elegans] ref|NP_509082.1| K10C2.3 [Caenorhabditis elegans] 0.0
blast AAK39258 Hypothetical protein K10C2.3 [Caenorhabditis elegans] ref|NP_509082.1| K10C2.3 [Caenorhabditis elegans] 1.0E-172
blast CAE61258 Hypothetical protein CBG05064 [Caenorhabditis briggsae] 1.0E-148
blast CAE61258 Hypothetical protein CBG05064 [Caenorhabditis briggsae] 1.0E-127
blast AAO25990 Aspartyl protease protein 2, isoform b [Caenorhabditis elegans] ref|NP_872129.1| ASpartyl Protease family member (asp-2) [Caenorhabditis elegans] 7.0E-32
blast AAO25990 Aspartyl protease protein 2, isoform b [Caenorhabditis elegans] ref|NP_872129.1| ASpartyl Protease family member (asp-2) [Caenorhabditis elegans] 8.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509082.1 1 39-61
K10C2.3 1 39-61
SNAP00000032619 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189595_S_AT
ttcacagcctcatcgcaaatcggtggaaactcaccattcgttcaaggtgttaacgctgga
gacatttcgggcacattctactccatctggctcgagcacttcaaccaaactgatgatctc
ggaacccacggagttatttactacggaggatttgatccagtgcactgtgctccaaaccca
acatacgtcccattggcttctgcatatgcataccaactcacgatgtcttccttcaaagtt
gtaggatcatccgccaccaactccaacaacaagtacattcaaacttaccttgacaccacc
accgcccaaattggacttccaaaaacttacattagccaggtgtttgactcccttggcatc
agcacaaacgttatgaatgctatctacccaacaattgttccatgtaacactaagatcacc
ctcacttttggatttgtttctggtacaacagtctcaattacggaaagagatcttgttatt
agcttcttcggaacatgtagactccaaattattccaaccactgatagaatcattctcggt
cttccattgtatcgtggacgttgcacatatttcgatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACAGCCTCATCGCAAATCGGTG 400 683 622 Antisense
GAGACATTTCGGGCACATTCTACTC 375 393 680 Antisense
AAACTGATGATCTCGGAACCCACGG 532 125 728 Antisense
GATTTGATCCAGTGCACTGTGCTCC 571 427 770 Antisense
CCAACATACGTCCCATTGGCTTCTG 97 277 799 Antisense
AACTCACGATGTCTTCCTTCAAAGT 129 141 836 Antisense
TAGCCAGGTGTTTGACTCCCTTGGC 556 651 954 Antisense
CTCCCTTGGCATCAGCACAAACGTT 48 235 969 Antisense
AAGATCACCCTCACTTTTGGATTTG 598 153 1033 Antisense
GACTCCAAATTATTCCAACCACTGA 480 373 1121 Antisense
GGACGTTGCACATATTTCGATCCAA 225 523 1177 Antisense
Sequence Source Affymetrix Proprietary Database