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[189592_at]

Description K07F5.11_rc /REP_DB=WormBase Gene ID /WP=CE06125 /GEN=ssq-1 /TR=Q21294 /GB=CAA94280.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 19      4grp_total > 25      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.8
(-3)
A 		18.8
(3)
A 		15.2
(-2.4)
A 		18.4
(2.4)
A 		4
B 2.8
(-3)
A 		16.2
(2.9)
A 		16.4
(3)
A 		5.3
(-1.9)
A 		14
C 5.9
(-2.4)
A 		3.8
(-3)
A 		5.3
(-2.6)
A 		25.5
(3)
A 		22
avr 7.8
(-3) 		12.9
(0.6) 		12.3
(0.1) 		16.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 42.2
(3)
A 		10.1
(-1.9)
A 		3
(-3)
A 		7.7
(-2.3)
A 		12.7
(-1.5)
A 		3.2
(-3)
A 		39
B 9.9
(-1.4)
A 		8.6
(-1.8)
A 		8
(-2)
A 		24.4
(3)
A 		6
(-2.6)
A 		4.7
(-3)
A 		20
C 7.8
(-1.8)
A 		8.3
(-1.7)
A 		3.5
(-3)
A 		12.6
(-0.5)
A 		25.4
(3)
A 		5.1
(-2.6)
A 		22
avr 20
(3) 		9
(-1.2) 		4.8
(-2.8) 		14.9
(1.1) 		14.7
(1) 		4.3
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.4
(3)
A 		4.1
(0.1)
A 		4
(-0.1)
A 		2.7
(-3)
A 		3
B 0.9
(-3)
A 		4
(3)
A 		3.8
(2.6)
A 		1.1
(-2.6)
A 		3
C 2
(-1.3)
A 		1.1
(-3)
A 		1.9
(-1.5)
A 		4.3
(3)
A 		3
avr 2.8
(-1.8) 		3.1
(1.8) 		3.2
(3) 		2.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.8
(3)
A 		3.6
(-0.5)
A 		0.7
(-3)
A 		2
(-1.9)
A 		3.8
(-0.4)
A 		0.8
(-2.9)
A 		7
B 3.4
(-0.9)
A 		2.9
(-1.5)
A 		1.9
(-2.8)
A 		6.5
(3)
A 		2.4
(-2.1)
A 		1.7
(-3)
A 		5
C 2.9
(-1.4)
A 		2.5
(-1.7)
A 		0.9
(-3)
A 		2.5
(-1.7)
A 		8.2
(3)
A 		1.7
(-2.3)
A 		7
avr 4.7
(2.8) 		3
(0) 		1.2
(-3) 		3.7
(1.2) 		4.8
(3) 		1.4
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28139
Sequence Type Exemplar sequence
Representative Public ID K07F5.11 NCBI
Target Description K07F5.11_rc /REP_DB=WormBase Gene ID /WP=CE06125 /GEN=ssq-1 /TR=Q21294 /GB=CAA94280.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K07F5.11
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07F5.11 K07F5.11_rc /REP_DB=WormBase Gene ID /WP=CE06125 /GEN=ssq-1 /TR=Q21294 /GB=CAA94280.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069367 11/11 Negative Strand Matching Probes A 
SNAP00000004253 11/11 Negative Strand Matching Probes None
GENEFINDER00000004262 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9852567-9853537(-) 100.0 100.0
chrIV:4996172-4997492(-) 90.95 90.95
Public Domain and Genome References
Ensembl K07F5.11
Sequence
Target Sequence 
>C. ELEGANS:189592_AT
gggctccaacagcagtcattgtagatgctccacgtggggctccgccaacagcggtcatgg
tggaagcttcacctggggctcctccaacagctgtcatcgtagaagctccagttggcgccc
caccgacagcggtcatggttgaagctcctcgcggagctcctcccacagcggtcatggtgg
aagcaccagttggagctcctccgacggcagtcatcgtggaagctcctctcggggctcctc
cgacagctgtcatagtagatgcgccagatggtgctccgccaagagcagtcattgtcgagg
cacctccaccagctggtggtggggctcccataggaacggcagctggggcacctccgactg
gtgctcctccaacagcgaagtaagctgactgggctccgccaccgccacctcctccggctc
cagctcccatgtacactgatgttcctgggggtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTCCAACAGCAGTCATTGTAGA 130 493 306 Antisense
CCCCACCGACAGCGGTCATGGTTGA 626 259 423 Antisense
TGGTTGAAGCTCCTCGCGGAGCTCC 472 551 441 Antisense
GTGGAAGCACCAGTTGGAGCTCCTC 347 491 482 Antisense
CGACGGCAGTCATCGTGGAAGCTCC 380 251 507 Antisense
GTAGATGCGCCAGATGGTGCTCCGC 91 457 560 Antisense
GATGGTGCTCCGCCAAGAGCAGTCA 524 407 572 Antisense
TGGTGGGGCTCCCATAGGAACGGCA 322 551 622 Antisense
GCGAAGTAAGCTGACTGGGCTCCGC 197 287 680 Antisense
TCCAGCTCCCATGTACACTGATGTT 32 591 724 Antisense
GTACACTGATGTTCCTGGGGGTGGT 107 461 736 Antisense
Sequence Source Affymetrix Proprietary Database