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[189590_at] Protein kinase

Description C45G9.1 /REP_DB=WormBase Gene ID /WP=CE24851 /TR=SW:Q09503 /GB=AAA62546.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster 6grp_total > 33      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 44.7
(1)
A 		5.8
(-3)
A 		9.3
(-2.6)
A 		64.5
(3)
A 		59
B 43.1
(1.6)
A 		18.4
(-1.3)
A 		3.5
(-3)
A 		54.9
(3)
A 		51
C 28.7
(-2.8)
A 		30.3
(-2.7)
A 		25.7
(-3)
A 		134.9
(3)
A 		109
avr 38.8
(-0.8) 		18.2
(-2.6) 		12.8
(-3) 		84.8
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 81.7
(3)
A 		8.2
(-2.6)
A 		51.9
(0.7)
A 		4.2
(-2.9)
A 		6.6
(-2.7)
A 		3
(-3)
A 		79
B 37.6
(3)
A 		21.9
(0.2)
A 		11.9
(-1.5)
A 		4.2
(-2.9)
A 		8.6
(-2.1)
A 		3.7
(-3)
A 		34
C 11.5
(-2.1)
A 		24.1
(-0.7)
A 		57
(2.9)
A 		57.7
(3)
A 		24.6
(-0.6)
A 		3
(-3)
A 		55
avr 43.6
(3) 		18.1
(-0.8) 		40.3
(2.5) 		22
(-0.2) 		13.3
(-1.5) 		3.2
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.3
(3)
A 		1.2
(-3)
A 		2.4
(-2.5)
A 		9.4
(0.3)
A 		15
B 13.7
(3)
A 		4.5
(-1.3)
A 		0.8
(-3)
A 		11.7
(2.1)
A 		13
C 9.5
(-2.7)
A 		8.7
(-3)
A 		8.9
(-2.9)
A 		22.8
(3)
A 		14
avr 13.2
(2.2) 		4.8
(-2.5) 		4
(-3) 		14.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 15.1
(3)
A 		2.9
(-2.1)
A 		11.3
(1.4)
A 		1.1
(-2.8)
A 		2
(-2.5)
A 		0.7
(-3)
A 		14
B 13.1
(3)
A 		7.3
(0.1)
A 		2.9
(-2.1)
A 		1.1
(-3)
A 		3.5
(-1.8)
A 		1.4
(-2.9)
A 		12
C 4.3
(-1.5)
A 		7.4
(-0.2)
A 		14.5
(3)
A 		11.6
(1.7)
A 		8
(0.1)
A 		1
(-3)
A 		14
avr 10.8
(3) 		5.9
(-0) 		9.6
(2.3) 		4.6
(-0.8) 		4.5
(-0.9) 		1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7563
Sequence Type Exemplar sequence
Representative Public ID C45G9.1 NCBI
Target Description C45G9.1 /REP_DB=WormBase Gene ID /WP=CE24851 /TR=SW:Q09503 /GB=AAA62546.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065679 NCBI Caenorhabditis elegans C45G9.1 (C45G9.1) mRNA, complete cds. 11/11 None
C45G9.1 ENSEMBL cdna:known chromosome:CEL140:III:5074657:5075927:1 gene:C45G9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022619 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022633 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5074923-5075926(+) 99.54 99.54
Public Domain and Genome References
Gene Title Protein kinase
Ensembl C45G9.1
Entrez Gene 183478 Entrez gene
SwissProt Q09503 EMBL-EBI
WormBase CE24851 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498080 C45G9.1 [Caenorhabditis elegans] gb|AAA62546.2| Hypothetical protein C45G9.1 [Caenorhabditis elegans] sp|Q09503|YQI1_CAEEL Hypothetical protein C45G9.1 in chromosome III 1.0E-175
blast C88449 protein C45G9.1 [imported] - Caenorhabditis elegans 1.0E-153
blast CAA92625 Hypothetical protein W01B6.2 [Caenorhabditis elegans] ref|NP_501824.1| W01B6.2 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.9E-8
Sequence
Target Sequence 
>C. ELEGANS:189590_AT
ggtcttggaagacctttcgctcgttatcatgcccgagagaataaatggattgtacgtata
gctcgtcattctgcagagtttcgtgggagttttcgttacgcgtctccgaatgtccatctc
cgtaaagagcaaggacgagttgacgatgtatggtcactgccctacgtcatcattgagctc
aacggcggaaaggcactcccatggcaaaccgattatcgacgcggacgtgtggagcaaatg
aagctgaacttgacgccaaaggatgtcatgtctgatatgccagcttgtatggataaattg
atgcctcatttggcttccctcaattactaccaaagaccggatgatcacatgatcttcaag
tgtttctggcaagtcatggagaacgagaagatcactccaagttcaaagttcgactgggaa
aatgaggagcctgatatgtctgttccacctgcagcttgggagaatccagacggacgctac
ttccaatccaatcctcttgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCTTGGAAGACCTTTCGCTCGTT 527 503 340 Antisense
TTTCGCTCGTTATCATGCCCGAGAG 48 671 354 Antisense
AGCTCGTCATTCTGCAGAGTTTCGT 433 79 399 Antisense
TCGTGGGAGTTTTCGTTACGCGTCT 545 591 420 Antisense
TCCGAATGTCCATCTCCGTAAAGAG 308 595 444 Antisense
TGACGATGTATGGTCACTGCCCTAC 334 569 480 Antisense
AGCTCAACGGCGGAAAGGCACTCCC 12 79 515 Antisense
TTTGGCTTCCCTCAATTACTACCAA 652 665 648 Antisense
AGGAGCCTGATATGTCTGTTCCACC 417 55 764 Antisense
GAGAATCCAGACGGACGCTACTTCC 445 389 799 Antisense
TACTTCCAATCCAATCCTCTTGAAA 435 645 817 Antisense
Sequence Source Affymetrix Proprietary Database