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[189589_s_at] DNA repair protein

Description C27B7.4 /REP_DB=WormBase Gene ID /WP=CE17477 /TR=Q18241 /GB=CAA90984.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=DNA repair protein
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 85      6grp_total > 46      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 719.2
(1.7)
P 		411
(-3)
P 		570.9
(-0.6)
P 		805.3
(3)
P 		394
B 812.2
(1.1)
P 		522.7
(-2.9)
P 		518.5
(-3)
P 		952.8
(3)
P 		434
C 826.4
(1.5)
P 		422.7
(-3)
P 		504.5
(-2.1)
P 		963.8
(3)
P 		541
avr 785.9
(1.4) 		452.1
(-3) 		531.3
(-2) 		907.3
(3) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 640.6
(-3)
P 		1016.4
(3)
P 		650.8
(-2.8)
P 		798.2
(-0.5)
P 		649.2
(-2.9)
P 		990.7
(2.6)
P 		376
B 775.7
(1.9)
P 		811.3
(3)
P 		650.4
(-1.9)
P 		677.1
(-1.1)
P 		612.9
(-3)
P 		766.5
(1.6)
P 		198
C 850.6
(3)
P 		805.1
(1.3)
P 		744.7
(-0.9)
P 		689.6
(-3)
P 		700.8
(-2.6)
P 		750.2
(-0.7)
P 		161
avr 755.6
(-0.3) 		877.6
(3) 		682
(-2.3) 		721.6
(-1.2) 		654.3
(-3) 		835.8
(1.9) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 261.9
(3)
P 		89.2
(-3)
P 		149.2
(-0.9)
P 		117.9
(-2)
P 		173
B 259
(3)
P 		129.1
(-2.6)
P 		120.2
(-3)
P 		203
(0.6)
P 		139
C 273.6
(3)
P 		121.5
(-3)
P 		175.8
(-0.9)
P 		162.5
(-1.4)
P 		152
avr 264.8
(3) 		113.3
(-3) 		148.4
(-1.6) 		161.1
(-1.1) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 118.1
(-3)
P 		361.5
(3)
P 		141.7
(-2.4)
P 		202.4
(-0.9)
P 		195.9
(-1.1)
P 		241.2
(0)
P 		243
B 269.9
(2.3)
P 		270
(2.3)
P 		157.9
(-3)
P 		179.3
(-2)
P 		249
(1.3)
P 		285.8
(3)
P 		128
C 315.3
(3)
P 		245.7
(0.6)
P 		189.5
(-1.3)
P 		138.7
(-3)
P 		226.8
(-0)
P 		251.1
(0.8)
P 		177
avr 234.4
(0.3) 		292.4
(3) 		163
(-3) 		173.5
(-2.5) 		223.9
(-0.2) 		259.4
(1.5) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189589_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9074
Sequence Type Exemplar sequence
Representative Public ID C27B7.4 NCBI
Target Description C27B7.4 /REP_DB=WormBase Gene ID /WP=CE17477 /TR=Q18241 /GB=CAA90984.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=DNA repair protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069144 NCBI Caenorhabditis elegans C27B7.4 (C27B7.4) mRNA, complete cds. 11/11 None
SNAP00000019242 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8895686:8901029:1 11/11 None
GENEFINDER00000019252 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8894115:8901029:1 11/11 None
C27B7.4 ENSEMBL cdna:known chromosome:CEL140:IV:8894088:8901359:1 gene:C27B7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8894093-8901035(+) 97.91 100.0
Public Domain and Genome References
Gene Title DNA repair protein
Ensembl C27B7.4
Entrez Gene 177706 Entrez gene
SwissProt Q18241 EMBL-EBI
WormBase CE17477 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623343_AT dm
DROSGENOME1:147840_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90984 Hypothetical protein C27B7.4 [Caenorhabditis elegans] ref|NP_501545.1| C27B7.4 [Caenorhabditis elegans] 0.0
blast CAE74063 Hypothetical protein CBG21715 [Caenorhabditis briggsae] 0.0
blast AAF47165 CG4049-PA [Drosophila melanogaster] ref|NP_611885.3| CG4049-PA [Drosophila melanogaster] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.7E-21
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.2E-45
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.0E-22
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.7E-21
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.2E-45
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.0E-22
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.7E-21
Pfam IPR000330 EMBL-EBI SNF2 related domain 6.2E-45
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.0E-22
Sequence
Target Sequence 
>C. ELEGANS:189589_S_AT
ttggcaacaatctcctaatcagcttgcacccaattttggatcttatccaccacagcaatt
tccacaaccgatgccaaacatgtcacaatttccacctcatggaccatcacctcaaattcc
atcaattcgtccatcaccaatgcctcacacgcttcgaatgaatgtcagtcaattccatca
ccaaggaggtggtcatacgatgacgtcattcaacaatggctatccgaataataacaatgg
aggagctataggaaaccctcaacaaatgcttcctccaagagatccatcagcttttccggg
agctgttatgagcaaaataccatcattttccccggctggagcagttcaacaattgattac
tgatagacaactcgtttttcccattgtcggacatagagatcagcttcatcaggttcaggc
aaatacaccaatacagttagttgttccgaaaaatggatattatgtgaaactacgtgatgg
aacaattcttgacgctgtcggaagtgtttttgagaatcatgcccgtcagcttcgtgatat
gtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAACAATCTCCTAATCAGCTT 628 707 3234 Antisense
TAATCAGCTTGCACCCAATTTTGGA 444 635 3249 Antisense
AATTTCCACAACCGATGCCAAACAT 154 173 3290 Antisense
AAACATGTCACAATTTCCACCTCAT 232 129 3309 Antisense
CTCATGGACCATCACCTCAAATTCC 421 229 3329 Antisense
ATGCCTCACACGCTTCGAATGAATG 585 41 3373 Antisense
CCAAGAGATCCATCAGCTTTTCCGG 197 277 3508 Antisense
ACTCGTTTTTCCCATTGTCGGACAT 425 97 3603 Antisense
GAGATCAGCTTCATCAGGTTCAGGC 47 397 3629 Antisense
TGGAACAATTCTTGACGCTGTCGGA 376 547 3711 Antisense
GCCCGTCAGCTTCGTGATATGTATC 22 287 3754 Antisense
Sequence Source Affymetrix Proprietary Database