[Home] | [Total List]

[189588_at] cytochrome P450

Description T10B9.8 /REP_DB=WormBase Gene ID /WP=CE01660 /TR=SW:Q27520 /GB=CAA88610.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 78      4grp_high_8_8 > 05      6grp_total > 58      4grp_total > 12      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 32.8
(-1.1)
P 		25.6
(-1.7)
P 		10.2
(-3)
A 		80.7
(3)
P 		71
B 41.1
(1.4)
P 		29.4
(-1.5)
P 		23.1
(-3)
A 		47.5
(3)
A 		24
C 41.5
(-1.8)
P 		48.9
(-1.2)
A 		23.6
(-3)
P 		110
(3)
P 		86
avr 38.5
(-1.1) 		34.6
(-1.5) 		19
(-3) 		79.4
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 61.9
(-0.8)
P 		41.4
(-2.7)
P 		64.1
(-0.6)
P 		87.5
(1.6)
P 		38.4
(-3)
A 		102.1
(3)
P 		64
B 79.8
(1.2)
P 		44.3
(-2.7)
P 		44.6
(-2.6)
P 		41.1
(-3)
P 		77.9
(1)
P 		96.6
(3)
P 		56
C 105.4
(3)
P 		61.4
(-2.2)
P 		54.8
(-3)
P 		82.5
(0.3)
P 		63.1
(-2)
P 		87.7
(0.9)
P 		51
avr 82.4
(1.3) 		49
(-3) 		54.5
(-2.3) 		70.4
(-0.2) 		59.8
(-1.6) 		95.5
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12
(3)
P 		5.6
(-1.1)
P 		2.7
(-3)
A 		11.8
(2.9)
P 		9
B 13.1
(3)
P 		7.3
(-1.5)
P 		5.4
(-3)
A 		10.1
(0.7)
A 		8
C 13.7
(0.2)
P 		14.1
(0.4)
A 		8.2
(-3)
P 		18.5
(3)
P 		10
avr 12.9
(2.6) 		9
(-0.3) 		5.4
(-3) 		13.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 11.4
(-3)
P 		14.7
(-1.5)
P 		14
(-1.8)
P 		22.2
(1.8)
P 		11.6
(-2.9)
A 		24.9
(3)
P 		14
B 27.8
(1)
P 		14.7
(-2.1)
P 		10.8
(-3)
P 		10.9
(-3)
P 		31.7
(2)
P 		36
(3)
P 		25
C 39.1
(3)
P 		18.7
(-1.9)
P 		14
(-3)
P 		16.6
(-2.4)
P 		20.4
(-1.5)
P 		29.4
(0.7)
P 		25
avr 26.1
(1.6) 		16
(-1.9) 		12.9
(-3) 		16.6
(-1.7) 		21.2
(-0.1) 		30.1
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3286
Sequence Type Exemplar sequence
Representative Public ID T10B9.8 NCBI
Target Description T10B9.8 /REP_DB=WormBase Gene ID /WP=CE01660 /TR=SW:Q27520 /GB=CAA88610.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063707 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13A1) (cyp-13A1) mRNA, complete cds. 11/11 None
SNAP00000024362 ENSEMBL cdna:SNAP chromosome:CEL140:II:9779256:9781996:-1 11/11 None
GENEFINDER00000024379 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9779256:9787264:-1 11/11 None
T10B9.8 ENSEMBL cdna:known chromosome:CEL140:II:9779256:9781861:-1 gene:T10B9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9779252-9781858(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-13A1
Ensembl T10B9.8
Entrez Gene 188361 Entrez gene
SwissProt Q27520 EMBL-EBI
WormBase CE01660 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635008_AT Cytochrome P450-9b2 dm
DROSGENOME1:142222_AT Cytochrome P450-9b2 dm
RT-U34:X62086MRNA_S_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
RG-U34A:X62086MRNA_S_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
RT-U34:M13646_S_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
RG-U34A:M13646_S_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
RAE230A:1370593_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
RAT230_2:1370593_AT cytochrome P450, family 3, subfamily a, polypeptide 11 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88610 Hypothetical protein T10B9.8 [Caenorhabditis elegans] ref|NP_496108.1| CYtochrome P450 family member (cyp-13A1) [Caenorhabditis elegans] sp|Q27520|C13A1_CAEEL Putative cytochrome P450 CYP13A1 0.0
blast CAA87042 Hypothetical protein ZK1320.4 [Caenorhabditis elegans] ref|NP_496085.3| CYtochrome P450 family member (cyp-13A10) [Caenorhabditis elegans] sp|Q09653|C13AA_CAEEL Putative cytochrome P450 CYP13A10 0.0
blast CAE57997 Hypothetical protein CBG01060 [Caenorhabditis briggsae] 0.0
blast CAA88607 Hypothetical protein T10B9.7 [Caenorhabditis elegans] ref|NP_496109.1| CYtochrome P450 family member (cyp-13A2) [Caenorhabditis elegans] sp|Q27518|C13A2_CAEEL Putative cytochrome P450 CYP13A2 0.0
blast CAE57972 Hypothetical protein CBG01033 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CP13_ONCMY Animalia; CYP1A3; tro; CP13_ONCMY; Trout; Q92109 7.0E-92
p450 CP13_ONCMY Animalia; CYP1A3; tro; CP13_ONCMY; Trout; Q92109 1.0E-131
p450 CP13_ONCMY Animalia; CYP1A3; tro; CP13_ONCMY; Trout; Q92109 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.5E-21
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.3E-66
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.3E-66
Pfam IPR001128 EMBL-EBI Cytochrome P450 9.8E-81
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.5E-21
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.3E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496108.1 1 5-27
T10B9.8 1 5-27
GENEFINDER00000024379 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189588_AT
gacagtgtacagtttttcttattgctggatttgatacaaccgccttatctctttcatatg
ccacgtatctcctggcaactcatccagagattcagaagaaattacaagaagaagtgaaca
gagaatgtccaaatcctgaagttactattgatcagctatcaaaattaaagtacatggaat
gtgtattcaaagaagctctcagattgtatccacttggagcgtttgccaactcaagacgat
gtatgagaaatactaaacttggtaatatgaaagtagaagttggaaccatgattcaggttg
atacttggacacttcatactgatccaaacatttggggagatgatgctgaagattttaaac
ccgagagatggcaaactccaaattctgatcaaatttaccaaaagagcggatatattccat
ttggattaggaccccgtcagtgtattggaatgcgtttggcttatatggaggagaaaattc
tgttggttcatattctcagaaaattcacatttgaaactggcgccaaaacagaaatcccgt
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTGTACAGTTTTTCTTATTGC 405 369 965 Antisense
GATTTGATACAACCGCCTTATCTCT 197 427 992 Antisense
TTATCTCTTTCATATGCCACGTATC 20 681 1009 Antisense
GAGAATGTCCAAATCCTGAAGTTAC 296 391 1085 Antisense
GAAGCTCTCAGATTGTATCCACTTG 126 343 1156 Antisense
TGGAGCGTTTGCCAACTCAAGACGA 467 549 1179 Antisense
GATTCAGGTTGATACTTGGACACTT 121 429 1254 Antisense
GACACTTCATACTGATCCAAACATT 327 367 1272 Antisense
TGGCAAACTCCAAATTCTGATCAAA 585 545 1333 Antisense
CCATTTGGATTAGGACCCCGTCAGT 541 261 1381 Antisense
GGCGCCAAAACAGAAATCCCGTTGA 273 539 1483 Antisense
Sequence Source Affymetrix Proprietary Database