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[189587_s_at] acetyltransferase

Description W03F9.4 /REP_DB=WormBase Gene ID /WP=CE21255 /TR=O16992 /GB=AAG24207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acetyltransferase
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1525
1 2 3 4 range
A 1764.2
(3)
P 		473.7
(-2.1)
P 		257.7
(-3)
P 		385.1
(-2.5)
P 		1507
B 1631.3
(3)
P 		526.6
(-1.8)
P 		262.2
(-3)
P 		362.8
(-2.6)
P 		1369
C 1733
(3)
P 		520.7
(-1.9)
P 		239.7
(-3)
P 		346
(-2.6)
P 		1493
avr 1709.5
(3) 		507
(-2) 		253.2
(-3) 		364.6
(-2.5) 		1456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 897
1 2 3 4 5 6 range
A 1005.1
(3)
P 		231.8
(-2.2)
P 		142.1
(-2.9)
P 		169.3
(-2.7)
P 		120.3
(-3)
P 		624.9
(0.4)
P 		885
B 1016.9
(3)
P 		235
(-2.3)
P 		188.6
(-2.7)
P 		200.3
(-2.6)
P 		139.8
(-3)
P 		454.8
(-0.8)
P 		877
C 962.8
(3)
P 		229.9
(-2.5)
P 		190.6
(-2.8)
P 		166.1
(-3)
P 		174.3
(-2.9)
P 		579.4
(0.1)
P 		797
avr 994.9
(3) 		232.2
(-2.4) 		173.8
(-2.8) 		178.6
(-2.8) 		144.8
(-3) 		553
(-0.1) 		850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 642.4
(3)
P 		102.8
(-2.5)
P 		67.4
(-2.9)
P 		56.4
(-3)
P 		586
B 520.2
(3)
P 		130.1
(-2.1)
P 		60.8
(-3)
P 		77.3
(-2.8)
P 		459
C 573.7
(3)
P 		149.7
(-1.9)
P 		83.5
(-2.7)
P 		58.3
(-3)
P 		515
avr 578.8
(3) 		127.5
(-2.3) 		70.6
(-2.9) 		64
(-3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 185.3
(3)
P 		82.4
(-1)
P 		30.9
(-3)
P 		42.9
(-2.5)
P 		36.3
(-2.8)
P 		152.1
(1.7)
P 		154
B 353.8
(3)
P 		78.2
(-2.4)
P 		45.8
(-3)
P 		53.1
(-2.9)
P 		56.8
(-2.8)
P 		169.6
(-0.6)
P 		308
C 356.9
(3)
P 		70.1
(-2.3)
P 		48.5
(-2.7)
P 		33.4
(-3)
P 		56.4
(-2.6)
P 		194
(-0)
P 		324
avr 298.7
(3) 		76.9
(-2.2) 		41.7
(-3) 		43.1
(-3) 		49.8
(-2.8) 		171.9
(0) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189587_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14943
Sequence Type Exemplar sequence
Representative Public ID W03F9.4 NCBI
Target Description W03F9.4 /REP_DB=WormBase Gene ID /WP=CE21255 /TR=O16992 /GB=AAG24207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=acetyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070744 NCBI Caenorhabditis elegans W03F9.4 (acetyltransferase) mRNA, complete cds. 11/11 None
SNAP00000001167 ENSEMBL cdna:SNAP chromosome:CEL140:V:147503:151210:-1 11/11 None
GENEFINDER00000001171 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:147503:151253:-1 11/11 None
W03F9.4 ENSEMBL cdna:known chromosome:CEL140:V:147366:151212:-1 gene:W03F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:147502-151210(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetyltransferase
Ensembl W03F9.4
Entrez Gene 178543 Entrez gene
SwissProt O16992 EMBL-EBI
WormBase CE21255 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503145 W03F9.4 [Caenorhabditis elegans] gb|AAG24207.1| Hypothetical protein W03F9.4 [Caenorhabditis elegans] 0.0
blast CAE62371 Hypothetical protein CBG06455 [Caenorhabditis briggsae] 0.0
blast CAB60359 Hypothetical protein Y46G5A.17 [Caenorhabditis elegans] ref|NP_496721.2| Y46G5A.17 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503145.1 3 25-47,62-84,89-111
W03F9.4 3 25-47,62-84,89-111
SNAP00000001167 3 25-47,62-84,89-111
GENEFINDER00000001171 1 122-144
Sequence
Target Sequence 
>C. ELEGANS:189587_S_AT
gatgcttatatccagatggctctgcaaatggcttatttcaaggatcaaggaaagttcgag
caaacttatgagcccgcggtgatgagattattcaaggagggaagaactgaaactgttaga
tcgtgctctatctggtcatgtgattttgtgagaactatgctgaaaaaggacgtgggtgca
gggaaaaaattggagaagctgaaagaggcatgtgatcatcaccaagattattatagaact
gcgatggctggaaaaggagtcgaccgtcatctatttgccttgtacgtcgtcgcccgttac
cttgaaatcaaaactccattccttgagaacgtattcggcaggaactggtccctatccaca
agccagacccctcaacatcaaatggtcgaatacgcgaaagccctcaacaaagaaccatca
cttttctggccagccggtggatttgcatgccccgatggctctaactatggggtgtgctat
acaattggaacgaccggagatcgaatgagtttccatgtgaccacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTATATCCAGATGGCTCTGC 254 413 1627 Antisense
AAACTTATGAGCCCGCGGTGATGAG 615 127 1688 Antisense
ATCGTGCTCTATCTGGTCATGTGAT 629 35 1746 Antisense
AGGAGTCGACCGTCATCTATTTGCC 208 57 1881 Antisense
ACTCCATTCCTTGAGAACGTATTCG 462 99 1939 Antisense
TATTCGGCAGGAACTGGTCCCTATC 283 661 1958 Antisense
TCGAATACGCGAAAGCCCTCAACAA 453 599 2012 Antisense
AAAGAACCATCACTTTTCTGGCCAG 189 121 2035 Antisense
TGGCCAGCCGGTGGATTTGCATGCC 285 545 2053 Antisense
ATGCCCCGATGGCTCTAACTATGGG 125 41 2073 Antisense
GAATGAGTTTCCATGTGACCACGTG 609 329 2129 Antisense
Sequence Source Affymetrix Proprietary Database