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[189578_at] cytochrome P450

Description T10B9.2 /REP_DB=WormBase Gene ID /WP=CE01656 /TR=SW:Q27514 /GB=CAA88604.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 57      6grp_total > 58      4grp_total > 03      6grp_cgc > 38      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 950
1 2 3 4 range
A 199.2
(-1.6)
P 		117.6
(-2.2)
M 		7.8
(-3)
A 		813
(3)
P 		805
B 226.2
(-2)
P 		77.9
(-3)
A 		99
(-2.9)
A 		957.6
(3)
P 		880
C 227.4
(-1.9)
P 		117
(-2.7)
A 		76.4
(-3)
M 		924.1
(3)
P 		848
avr 217.6
(-1.9) 		104.2
(-2.7) 		61.1
(-3) 		898.2
(3) 		837

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1996
1 2 3 4 5 6 range
A 546
(-1.5)
P 		147.5
(-2.7)
P 		90.9
(-2.9)
P 		49.1
(-3)
P 		103.1
(-2.8)
P 		2044.7
(3)
P 		1996
B 576.3
(-0.8)
P 		250.9
(-2.2)
P 		90.6
(-3)
A 		101.4
(-2.9)
P 		81.7
(-3)
P 		1432.4
(3)
P 		1351
C 775.1
(-0.1)
P 		158.5
(-2.7)
P 		104
(-2.9)
P 		75
(-3)
P 		87.5
(-2.9)
P 		1534.7
(3)
P 		1460
avr 632.5
(-0.9) 		185.6
(-2.6) 		95.2
(-2.9) 		75.2
(-3) 		90.8
(-2.9) 		1670.6
(3) 		1595
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 72.5
(0.6)
P 		25.5
(-1.8)
M 		2
(-3)
A 		119
(3)
P 		117
B 72.1
(-1.3)
P 		19.2
(-3)
A 		22.9
(-2.9)
A 		204.1
(3)
P 		185
C 75.3
(-0.7)
P 		33.6
(-2.7)
A 		26.6
(-3)
M 		155.8
(3)
P 		129
avr 73.3
(-0.6) 		26.1
(-2.6) 		17.2
(-3) 		159.6
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 100.7
(-1.9)
P 		52.5
(-2.5)
P 		19.8
(-2.9)
P 		12.5
(-3)
P 		31.1
(-2.8)
P 		497.8
(3)
P 		485
B 200.5
(-0.9)
P 		83.5
(-2.3)
P 		22
(-3)
A 		26.9
(-2.9)
P 		33.2
(-2.9)
P 		534.1
(3)
P 		512
C 287.3
(0.3)
P 		48.4
(-2.6)
P 		26.5
(-2.9)
P 		15.1
(-3)
P 		28.3
(-2.8)
P 		513.8
(3)
P 		499
avr 196.2
(-0.9) 		61.5
(-2.5) 		22.8
(-2.9) 		18.2
(-3) 		30.9
(-2.8) 		515.2
(3) 		497
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2678
Sequence Type Exemplar sequence
Representative Public ID T10B9.2 NCBI
Target Description T10B9.2 /REP_DB=WormBase Gene ID /WP=CE01656 /TR=SW:Q27514 /GB=CAA88604.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063711 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13A5) (cyp-13A5) mRNA, complete cds. 11/11 None
SNAP00000024368 ENSEMBL cdna:SNAP chromosome:CEL140:II:9798266:9800249:-1 11/11 None
GENEFINDER00000024378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9798266:9800249:-1 11/11 None
T10B9.2 ENSEMBL cdna:known chromosome:CEL140:II:9798266:9800249:-1 gene:T10B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9798262-9800246(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-13A5
Ensembl T10B9.2
Entrez Gene 188356 Entrez gene
SwissProt Q27514 EMBL-EBI
WormBase CE01656 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624101_AT dm
DROSGENOME1:147225_AT dm
MOE430A:1421741_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MOUSE430A_2:1421741_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MOUSE430_2:1421741_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MU11KSUBA:D26137_F_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MU11KSUBB:MSA.1504.0_F_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MG-U74AV2:101638_S_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
MG-U74AV2:101639_R_AT cytochrome P450, family 3, subfamily a, polypeptide 16 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88604 Hypothetical protein T10B9.2 [Caenorhabditis elegans] ref|NP_496112.1| CYtochrome P450 family member (cyp-13A5) [Caenorhabditis elegans] sp|Q27514|C13A5_CAEEL Putative cytochrome P450 CYP13A5 0.0
blast CAA88603 Hypothetical protein T10B9.1 [Caenorhabditis elegans] ref|NP_496111.1| CYtochrome P450 family member (cyp-13A4) [Caenorhabditis elegans] sp|Q27513|C13A4_CAEEL Putative cytochrome P450 CYP13A4 0.0
blast CAA88609 Hypothetical protein T10B9.10 [Caenorhabditis elegans] ref|NP_496114.1| CYtochrome P450 family member (cyp-13A7) [Caenorhabditis elegans] sp|Q27519|C13A7_CAEEL Putative cytochrome P450 CYP13A7 0.0
Protein Families
Method ID Description E-Value
p450 CP12_CAVPO Animalia; CYP1A2; gpi; CP12_CAVPO; Guinea Pig; Q64391 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.8E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496112.1 1 5-27
T10B9.2 1 5-27
SNAP00000024368 1 5-27
GENEFINDER00000024378 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189578_AT
gaaattattggccaattgttcgtttttctgttagctggatatgatacaactgccctttcc
ctctcatattcttcatatctcctggcaagacatccagagattcagaagaaattacaagaa
gaagtggatagagaatgcccaaatcctgaagtcacttttgatcaaatatcaaaattgaag
tacatggaatgtgtggtaaaggaagctctacgaatgtatccattagcatccatcgttcac
aaccgaaagtgcatgaaggaaacgaatgtacttggagttcaaatagagaaaggaacaaat
gttcaagtggatacatggacacttcattatgatccaaaagtttggggagaggatgcaaat
gagtttaggccagagagatgggaatctggagacgaactattttatgcaaaaggaggatat
cttccattcggtatgggaccaagaatttgtattggaatgcgattggcaatgatggaaaaa
aaaatgcttttgacccacatcctgaaaaagtacacattcgaaacttctacgcaaacagaa
attccattaaaattggtcggatccgccacaactgcaccaagaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTATTGGCCAATTGTTCGTTT 560 363 955 Antisense
TTGTTCGTTTTTCTGTTAGCTGGAT 476 681 970 Antisense
GAGAATGCCCAAATCCTGAAGTCAC 295 391 1085 Antisense
ATGCCCAAATCCTGAAGTCACTTTT 114 41 1089 Antisense
GAATGTATCCATTAGCATCCATCGT 367 331 1166 Antisense
AGCATCCATCGTTCACAACCGAAAG 471 77 1179 Antisense
AAACGAATGTACTTGGAGTTCAAAT 255 125 1214 Antisense
GGATGCAAATGAGTTTAGGCCAGAG 232 511 1305 Antisense
AAAAAATGCTTTTGACCCACATCCT 602 129 1433 Antisense
GTACACATTCGAAACTTCTACGCAA 199 461 1464 Antisense
TCCGCCACAACTGCACCAAGAAGTG 101 597 1516 Antisense
Sequence Source Affymetrix Proprietary Database