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[189576_at] Cysteine protease

Description Y40H7A.9 /REP_DB=WormBase Gene ID /WP=CE21820 /TR=Q9XW98 /GB=CAA22068.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Cysteine protease
Cluster 6grp_total > 17      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5
(-2.9)
A 		15.2
(-1.3)
A 		4.6
(-3)
A 		42.6
(3)
A 		38
B 4.8
(0.7)
A 		3.3
(-3)
A 		5.7
(3)
A 		5.3
(2)
A 		2
C 20.4
(0)
A 		4.8
(-2.6)
A 		2.7
(-3)
A 		38
(3)
P 		35
avr 10.1
(-1.6) 		7.8
(-2.1) 		4.3
(-3) 		28.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.5
(3)
A 		3.1
(-3)
A 		14
(-1.5)
A 		3.4
(-3)
A 		5
(-2.7)
A 		7.9
(-2.4)
A 		44
B 17.5
(3)
A 		2.5
(-2.7)
A 		12.2
(1)
A 		1.8
(-3)
A 		4.2
(-2.1)
A 		3
(-2.5)
A 		16
C 3.1
(-2.6)
A 		26.4
(3)
A 		1.6
(-3)
A 		5.6
(-2)
A 		9.7
(-1)
A 		15.7
(0.4)
A 		25
avr 22.7
(3) 		10.7
(-0.8) 		9.3
(-1.2) 		3.6
(-3) 		6.3
(-2.2) 		8.9
(-1.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.8
(-2.3)
A 		3.3
(-0.5)
A 		1.2
(-3)
A 		6.2
(3)
A 		5
B 1.5
(3)
A 		0.8
(-3)
A 		1.3
(1.3)
A 		1.1
(-0.4)
A 		1
C 6.8
(3)
A 		1.4
(-2.5)
A 		0.9
(-3)
A 		6.4
(2.6)
P 		6
avr 3.4
(0.9) 		1.8
(-1.8) 		1.1
(-3) 		4.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.8
(3)
A 		1.1
(-2.8)
A 		3
(-1.4)
A 		0.9
(-3)
A 		1.5
(-2.5)
A 		1.9
(-2.2)
A 		8
B 6.1
(3)
A 		0.8
(-2.7)
A 		3
(-0.3)
A 		0.5
(-3)
A 		1.7
(-1.7)
A 		1.1
(-2.4)
A 		6
C 1.2
(-2.4)
A 		8.1
(3)
A 		0.4
(-3)
A 		1.1
(-2.5)
A 		3.1
(-0.9)
A 		5.3
(0.8)
A 		8
avr 5.4
(3) 		3.3
(0.3) 		2.1
(-1.3) 		0.8
(-3) 		2.1
(-1.3) 		2.8
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8833
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.9 NCBI
Target Description Y40H7A.9 /REP_DB=WormBase Gene ID /WP=CE21820 /TR=Q9XW98 /GB=CAA22068.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Cysteine protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070434 NCBI Caenorhabditis elegans Y40H7A.9 (Y40H7A.9) mRNA, complete cds. 11/11 None
Y40H7A.9 ENSEMBL cdna:known chromosome:CEL140:IV:15205641:15209484:1 gene:Y40H7A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019417 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15205646-15209490(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cysteine protease
Ensembl Y40H7A.9
Entrez Gene 189808 Entrez gene
SwissProt Q9XW98 EMBL-EBI
WormBase CE21820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22068 Hypothetical protein Y40H7A.9 [Caenorhabditis elegans] ref|NP_502835.1| Y40H7A.9 [Caenorhabditis elegans] 1.0E-131
blast CAE68098 Hypothetical protein CBG13738 [Caenorhabditis briggsae] 5.0E-26
blast CAA22062 Hypothetical protein Y40H7A.10 [Caenorhabditis elegans] ref|NP_502836.1| Y40H7A.10 [Caenorhabditis elegans] 2.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502835.1 3 83-102,149-171,201-223
Y40H7A.9 3 83-102,149-171,201-223
Sequence
Target Sequence 
>C. ELEGANS:189576_AT
cttctccacgtcaaaacacttgcgtcgctggtttgcattaattttcatagctggtttcta
ctgggaaacatgcatattcttcatggcagccgataactcctatatcgacggaataattga
acaaactcttcaaaaatcctatggttttaatttaagtaatgtgacatacgtggcagcagt
ttatgaaattgaggaaaatggagtttcggattggaatctaaagggaatttatatgggaat
atcattttttacaattattatttcaactatgataacgtgttatgtttgtatgtggaagat
tggggaaaaggtgcagttgtttaggcattcgatgatttataatgaagtgcaacaggaatt
attcaaggcacagtgtattcagttgtgcattccaagtgtgctcgtcttccttccaatagt
ctctgtccttcttcttccaacttttcaattcaacggcagttccattttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTCCACGTCAAAACACTTGCGT 234 221 231 Antisense
AACACTTGCGTCGCTGGTTTGCATT 34 137 245 Antisense
GGTTTGCATTAATTTTCATAGCTGG 62 507 260 Antisense
TTTCATAGCTGGTTTCTACTGGGAA 360 671 273 Antisense
ATGCATATTCTTCATGGCAGCCGAT 422 43 300 Antisense
TCATGGCAGCCGATAACTCCTATAT 194 623 311 Antisense
ATGTGACATACGTGGCAGCAGTTTA 72 49 389 Antisense
GCAGTTGTTTAGGCATTCGATGATT 79 313 543 Antisense
ACAGTGTATTCAGTTGTGCATTCCA 651 107 600 Antisense
GTTGTGCATTCCAAGTGTGCTCGTC 493 437 612 Antisense
ATTCAACGGCAGTTCCATTTTCTCA 664 11 678 Antisense
Sequence Source Affymetrix Proprietary Database