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[189573_s_at] elongation factor

Description H19N07.1 /REP_DB=WormBase Gene ID /WP=CE16181 /TR=O45622 /GB=CAB07395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=elongation factor
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 08      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 74      6grp_total > 19      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 900.7
(3)
P 		556.5
(-1.9)
P 		821.3
(1.9)
P 		475
(-3)
P 		426
B 717.5
(2.2)
P 		760.2
(3)
P 		722.3
(2.3)
P 		426.7
(-3)
P 		334
C 948.7
(3)
P 		849.6
(1.7)
P 		947.5
(3)
P 		494.5
(-3)
P 		454
avr 855.6
(3) 		722.1
(0.9) 		830.4
(2.6) 		465.4
(-3) 		390

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1180
1 2 3 4 5 6 range
A 644.6
(-1.4)
P 		836.4
(0.8)
P 		499.6
(-3)
P 		1031.4
(3)
P 		585.5
(-2)
P 		818.5
(0.6)
P 		532
B 711.7
(1)
P 		591.1
(-1)
P 		476.8
(-3)
P 		677.9
(0.5)
P 		825.5
(3)
P 		609
(-0.7)
P 		349
C 1656.4
(3)
P 		701.5
(-1.9)
P 		760.1
(-1.6)
P 		504.8
(-2.9)
P 		1126.4
(0.3)
P 		484.7
(-3)
P 		1172
avr 1004.2
(3) 		709.7
(-1.2) 		578.8
(-3) 		738
(-0.8) 		845.8
(0.8) 		637.4
(-2.2) 		425
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 327.9
(3)
P 		120.8
(-1.8)
P 		214.7
(0.4)
P 		69.5
(-3)
P 		258
B 228.8
(3)
P 		187.8
(1.2)
P 		167.4
(0.3)
P 		90.9
(-3)
P 		138
C 314.1
(2.6)
P 		244.3
(0.9)
P 		330.2
(3)
P 		83.4
(-3)
P 		247
avr 290.3
(3) 		184.3
(-0) 		237.4
(1.5) 		81.3
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 118.8
(-2.7)
P 		297.5
(3)
P 		108.8
(-3)
P 		261.6
(1.9)
P 		176.7
(-0.8)
P 		199.3
(-0.1)
P 		189
B 247.6
(0.6)
P 		196.8
(-0.8)
P 		115.8
(-3)
P 		179.6
(-1.3)
P 		335.4
(3)
P 		227.1
(0)
P 		220
C 613.9
(3)
P 		214
(-1.7)
P 		193.5
(-1.9)
P 		101.5
(-3)
P 		364.5
(0.1)
P 		162.2
(-2.3)
P 		512
avr 326.8
(3) 		236.1
(0.1) 		139.4
(-3) 		180.9
(-1.7) 		292.2
(1.9) 		196.2
(-1.2) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189573_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14499
Sequence Type Exemplar sequence
Representative Public ID H19N07.1 NCBI
Target Description H19N07.1 /REP_DB=WormBase Gene ID /WP=CE16181 /TR=O45622 /GB=CAB07395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=elongation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073423(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073423 NCBI Caenorhabditis elegans H19N07.1 (H19N07.1) mRNA, complete cds. 9/11 None
SNAP00000011315 ENSEMBL cdna:SNAP chromosome:CEL140:V:11113036:11115658:-1 9/11 None
GENEFINDER00000011320 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11112894:11115658:-1 11/11 None
H19N07.1.1 ENSEMBL cdna:known chromosome:CEL140:V:11112651:11115691:-1 gene:H19N07.1 9/11 A 
H19N07.1.2 ENSEMBL cdna:known chromosome:CEL140:V:11112707:11115679:-1 gene:H19N07.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11113035-11115658(-) 100.0 100.0
Public Domain and Genome References
Gene Title elongation factor
Ensembl H19N07.1
Entrez Gene 179537 Entrez gene
SwissProt O45622 EMBL-EBI
WormBase CE32460 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256119_AT EF-1-alpha-related GTP-binding protein, putative at
CANINE:1600894_AT similar to G1 to S phase transition protein 1 homolog (GTP-binding protein GST1-HS) cfa
CANINE_2:CFA.20162.1.S1_S_AT similar to G1 to S phase transition protein 1 homolog (GTP-binding protein GST1-HS) cfa
DROSOPHILA_2:1640557_AT Ef1like factor dm
DROSGENOME1:143928_AT Ef1like factor dm
CHICKEN:GGA.18312.1.A1_AT G1 to S phase transition 1 gga
CHICKEN:GGA.6351.1.S1_AT G1 to S phase transition 1 gga
CHICKEN:GGA.9336.1.S1_AT G1 to S phase transition 1 gga
CHICKEN:GGA.9336.2.S1_A_AT G1 to S phase transition 1 gga
CHICKEN:GGAAFFX.11886.1.S1_S_AT G1 to S phase transition 1 gga
HG-U133_PLUS_2:215438_X_AT G1 to S phase transition 1 hs
HG-U133A_2:215438_X_AT G1 to S phase transition 1 hs
HG-U133A:215438_X_AT G1 to S phase transition 1 hs
PLASMODIUM_ANOPHELES:201912_S_AT G1 to S phase transition 1 hs
HG-U133_PLUS_2:201912_S_AT G1 to S phase transition 1 hs
HG-U133A:201912_S_AT G1 to S phase transition 1 hs
HG-FOCUS:201912_S_AT G1 to S phase transition 1 hs
HG-U133A_2:201912_S_AT G1 to S phase transition 1 hs
HUGENEFL:X17644_S_AT G1 to S phase transition 1 hs
U133_X3P:G4504166_3P_A_AT G1 to S phase transition 1 hs
U133_X3P:HS.2707.2.S1_3P_X_AT G1 to S phase transition 1 hs
U133_X3P:HS.2707.2.S1_3P_A_AT G1 to S phase transition 1 hs
U133_X3P:215438_3P_X_AT G1 to S phase transition 1 hs
HG-U95AV2:33932_AT G1 to S phase transition 1 hs
HG-U95B:58796_AT G1 to S phase transition 1 hs
HG-U133_PLUS_2:217595_AT G1 to S phase transition 1 hs
HG-U133A_2:217595_AT G1 to S phase transition 1 hs
HG-U133A:217595_AT G1 to S phase transition 1 hs
HU35KSUBA:AA039996_AT G1 to S phase transition 1 hs
HU35KSUBA:RC_AA112361_AT G1 to S phase transition 1 hs
HU35KSUBB:RC_N59481_AT G1 to S phase transition 1 hs
U133_X3P:HS.32204.0.A1_3P_AT G1 to S phase transition 1 hs
U133_X3P:HS.237849.0.A1_3P_AT G1 to S phase transition 1 hs
U133_X3P:HS.10592.0.A1_3P_AT G1 to S phase transition 1 hs
HG-U133_PLUS_2:225276_AT G1 to S phase transition 1 hs
HG-U133B:225276_AT G1 to S phase transition 1 hs
HG-U133_PLUS_2:234975_AT G1 to S phase transition 1 hs
HG-U133B:234975_AT G1 to S phase transition 1 hs
HG-U95C:58486_AT G1 to S phase transition 1 hs
HG-U95C:64091_AT G1 to S phase transition 1 hs
HG-U95D:80058_AT G1 to S phase transition 1 hs
HG-U133_PLUS_2:240452_AT G1 to S phase transition 1 hs
HG-U133B:240452_AT G1 to S phase transition 1 hs
HG-U95B:42688_AT G1 to S phase transition 1 hs
HG-U95E:81055_AT G1 to S phase transition 1 hs
U133_X3P:HS.112264.0.A1_3P_AT G1 to S phase transition 1 hs
HU35KSUBB:RC_R62452_AT G1 to S phase transition 1 hs
HU35KSUBD:RC_AA620636_AT G1 to S phase transition 1 hs
MU11KSUBA:AA409254_RC_AT G1 to S phase transition 1 mm
MU11KSUBB:MSA.40366.0_S_AT G1 to S phase transition 1 mm
MU11KSUBB:MSA.28090.0_S_AT G1 to S phase transition 1 mm
MU11KSUBB:MSA.40360.0_F_AT G1 to S phase transition 1 mm
MG-U74AV2:93727_AT G1 to S phase transition 1 mm
MG-U74BV2:110389_AT G1 to S phase transition 1 mm
MG-U74BV2:110390_G_AT G1 to S phase transition 1 mm
MG-U74BV2:109185_AT G1 to S phase transition 1 mm
MG-U74CV2:168708_I_AT G1 to S phase transition 1 mm
MG-U74CV2:168329_AT G1 to S phase transition 1 mm
MOE430A:1426736_AT G1 to S phase transition 1 mm
MOUSE430A_2:1426736_AT G1 to S phase transition 1 mm
MOUSE430_2:1426736_AT G1 to S phase transition 1 mm
MOE430A:1426737_AT G1 to S phase transition 1 mm
MOUSE430A_2:1426737_AT G1 to S phase transition 1 mm
MOUSE430_2:1426737_AT G1 to S phase transition 1 mm
MOE430A:1452168_X_AT G1 to S phase transition 1 mm
MOUSE430A_2:1452168_X_AT G1 to S phase transition 1 mm
MOUSE430_2:1452168_X_AT G1 to S phase transition 1 mm
MOE430B:1435000_AT G1 to S phase transition 1 mm
MOUSE430_2:1435000_AT G1 to S phase transition 1 mm
MOE430B:1455173_AT G1 to S phase transition 1 mm
MOUSE430_2:1455173_AT G1 to S phase transition 1 mm
MOE430B:1446550_AT G1 to S phase transition 1 mm
MOUSE430_2:1446550_AT G1 to S phase transition 1 mm
MU11KSUBB:MSA.26940.0_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBA:TC24394_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBA:TC25746_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBB:TC32557_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBC:TC35109_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBC:TC40354_AT G1 to S phase transition 1 (Gspt1), mRNA mm
MU19KSUBC:TC41571_AT G1 to S phase transition 1 (Gspt1), mRNA mm
RG-U34C:RC_AI229595_AT G1 to S phase transition 1 rn
RAE230A:1371585_AT G1 to S phase transition 1 rn
RAT230_2:1371585_AT G1 to S phase transition 1 rn
RAE230B:1394732_AT G1 to S phase transition 1 rn
RAT230_2:1394732_AT G1 to S phase transition 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07395 Hypothetical protein H19N07.1 [Caenorhabditis elegans] ref|NP_505824.2| H19N07.1 [Caenorhabditis elegans] 0.0
blast CAE75167 Hypothetical protein CBG23104 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 1.3E-13
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 4.1E-86
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 1.2E-32
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 5.5E-6
Pfam IPR004160 EMBL-EBI Elongation factor Tu, C-terminal 4.4E-20
Sequence
Target Sequence 
>C. ELEGANS:189573_S_AT
caggtgcttcagatttgggcggatgatgtggagactgaacgtgtcgtcgctggagataat
atcaaattcaagctgaagggaattgaagaaaacgaattgcaaggaggattcattatttgc
tcaccagattctcttgctaaaactggccgcgttttcgatgctgaagtccttgtcctcgag
cacagatcaattattgcatccggatattcatgtgtattgcatattcaatcagctgtcgaa
gaagtcactgtgaaggtatgtcttttgagacccgaagaactcgggggatgcccaattggg
gggattaccaactcgggggattggccccgcccacagaaccgtggcttgcaatacgcccat
ttctgcaactgccgcacgggagtcattgccacaattgacaagaaaacgggcgaaaagaag
cgtgctaagtttgtgaaacaagacgagaagtgcattatgagactagaaagtcctgaacca
ttcgtactcgagccattcaaagagtatccataccttggaagattcaccctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGTGCTTCAGATTTGGGCGGATG 168 205 1150 Antisense
GACTGAACGTGTCGTCGCTGGAGAT 69 375 1182 Antisense
TTGCTCACCAGATTCTCTTGCTAAA 688 703 1266 Antisense
TAAAACTGGCCGCGTTTTCGATGCT 347 633 1287 Antisense
TTTCGATGCTGAAGTCCTTGTCCTC 529 669 1302 Antisense
CCTTGTCCTCGAGCACAGATCAATT 275 269 1317 Antisense
GAACTCGGGGGATGCCCAATTGGGG 95 343 1426 Antisense
CAACTGCCGCACGGGAGTCATTGCC 624 187 1515 Antisense
GAAAGTCCTGAACCATTCGTACTCG 329 359 1615 Antisense
AACCATTCGTACTCGAGCCATTCAA 665 145 1625 Antisense
ATACCTTGGAAGATTCACCCTCAGA 33 23 1659 Antisense
Sequence Source Affymetrix Proprietary Database