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[189569_at] aspartyl protease

Description F59D6.2 /REP_DB=WormBase Gene ID /WP=CE11478 /TR=O16339 /GB=AAB65877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster 6grp_total > 59      4grp_total > 46      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 68.3
(3)
P 		5.8
(-3)
A 		52.2
(1.5)
A 		13.3
(-2.3)
A 		63
B 47
(3)
P 		23.9
(-1)
A 		12.1
(-3)
A 		12.5
(-2.9)
A 		35
C 39.8
(1)
A 		57.6
(3)
A 		3.7
(-3)
A 		26.4
(-0.5)
A 		54
avr 51.7
(3) 		29.1
(-1) 		22.7
(-2.1) 		17.4
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19.3
(-0.5)
A 		2.1
(-3)
A 		5.2
(-2.5)
A 		38.2
(2.3)
A 		17.2
(-0.8)
A 		43.1
(3)
M 		41
B 26.9
(3)
A 		8.5
(-2.7)
A 		7.6
(-3)
A 		17.1
(-0)
A 		8.9
(-2.6)
A 		14.5
(-0.9)
A 		19
C 41.9
(2.5)
A 		19.1
(-0.7)
A 		5.7
(-2.6)
A 		3.1
(-3)
A 		45.3
(3)
A 		39.6
(2.2)
A 		42
avr 29.4
(2.3) 		9.9
(-2.2) 		6.2
(-3) 		19.5
(0) 		23.8
(1) 		32.4
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24.9
(3)
P 		1.2
(-3)
A 		13.7
(0.2)
A 		2
(-2.8)
A 		24
B 15
(3)
P 		5.9
(-1.4)
A 		2.8
(-3)
A 		2.7
(-3)
A 		12
C 13.2
(1.7)
A 		16.6
(3)
A 		1.3
(-3)
A 		4.4
(-1.8)
A 		15
avr 17.7
(3) 		7.9
(-1) 		5.9
(-1.8) 		3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.6
(-1.3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		9.7
(2.5)
A 		5.2
(-0.3)
A 		10.5
(3)
M 		10
B 9.4
(3)
A 		2.8
(-2.3)
A 		1.9
(-3)
A 		4.5
(-0.9)
A 		3.6
(-1.6)
A 		5.4
(-0.2)
A 		8
C 15.5
(3)
A 		5.8
(-0.9)
A 		1.5
(-2.6)
A 		0.6
(-3)
A 		14.6
(2.6)
A 		13.3
(2.1)
A 		15
avr 9.5
(2.9) 		3.1
(-1.8) 		1.5
(-3) 		4.9
(-0.5) 		7.8
(1.6) 		9.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15830
Sequence Type Exemplar sequence
Representative Public ID F59D6.2 NCBI
Target Description F59D6.2 /REP_DB=WormBase Gene ID /WP=CE11478 /TR=O16339 /GB=AAB65877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=aspartyl protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071425 NCBI Caenorhabditis elegans F59D6.2 (F59D6.2) mRNA, complete cds. 11/11 None
SNAP00000018889 ENSEMBL cdna:SNAP chromosome:CEL140:V:3028121:3029410:1 11/11 None
GENEFINDER00000018898 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3028121:3029410:1 11/11 None
F59D6.2 ENSEMBL cdna:known chromosome:CEL140:V:3028121:3029410:1 gene:F59D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3028120-3029410(+) 100.0 100.0
Public Domain and Genome References
Gene Title aspartyl protease
Ensembl F59D6.2
Entrez Gene 186613 Entrez gene
SwissProt O16339 EMBL-EBI
WormBase CE35328 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65877 Hypothetical protein F59D6.2 [Caenorhabditis elegans] ref|NP_503826.2| F59D6.2 [Caenorhabditis elegans] 0.0
blast AAB65878 Hypothetical protein F59D6.3 [Caenorhabditis elegans] ref|NP_503825.1| F59D6.3 [Caenorhabditis elegans] 1.0E-178
blast AAB65878 Hypothetical protein F59D6.3 [Caenorhabditis elegans] ref|NP_503825.1| F59D6.3 [Caenorhabditis elegans] 1.0E-155
blast CAE72985 Hypothetical protein CBG20329 [Caenorhabditis briggsae] 2.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.1E-54
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 4.2E-41
Sequence
Target Sequence 
>C. ELEGANS:189569_AT
ctattgccacaacttgaccaaccactcttcactacttacttcacaaaatctagcgtgcat
aatggaacggtaggtggtgaaattacttttggagcaattgacaccacacactgccaatcg
caaataaactacgtccgacttgcctatgattcattatggagttattctatcgatggattt
tcctttggaaattattcaagaaatcagactgatacggctatcccggacacgacatccagc
tacactggcgttccaaatctcgtcctagccgaaatcgtaatagccactggagcacaatac
gactggaatcatcaagcatacactctcccgtgctcttcaactgccacacttcccgacctg
gttttcacaatcggtggaaactcgtacaacgtcagagcagtagaatacgtggtaaacttg
aacttgccaaacggacaatgtgctctttctctcttcggaacattttcctcgccctcgggt
cctttgtgggtctttggcgacaatttccttcgaagttactgccacata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTGCCACAACTTGACCAACCAC 327 223 583 Antisense
ACTCTTCACTACTTACTTCACAAAA 264 101 606 Antisense
ACCACACACTGCCAATCGCAAATAA 442 85 685 Antisense
AACTACGTCCGACTTGCCTATGATT 304 139 709 Antisense
TGATACGGCTATCCCGGACACGACA 327 563 792 Antisense
ACGACATCCAGCTACACTGGCGTTC 319 93 811 Antisense
TTCCAAATCTCGTCCTAGCCGAAAT 271 699 833 Antisense
GCCGAAATCGTAATAGCCACTGGAG 293 285 850 Antisense
TCTCTCTTCGGAACATTTTCCTCGC 205 613 1030 Antisense
GGTCTTTGGCGACAATTTCCTTCGA 490 503 1071 Antisense
TTTCCTTCGAAGTTACTGCCACATA 615 669 1086 Antisense
Sequence Source Affymetrix Proprietary Database