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[189568_at] membrane protein

Description F46F5.13 /REP_DB=WormBase Gene ID /WP=CE19429 /TR=Q9TXX6 /GB=AAC78191.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=membrane protein
Cluster 6grp_total > 08      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.5
(-3)
A 		3.6
(-0.6)
A 		6.7
(3)
A 		2.7
(-1.6)
A 		5
B 3.2
(-2.3)
A 		17.1
(3)
A 		2.4
(-2.6)
A 		1.3
(-3)
A 		16
C 1.9
(2.1)
A 		1.3
(-3)
A 		1.7
(0.4)
A 		2
(3)
A 		1
avr 2.2
(-2.8) 		7.3
(3) 		3.6
(-1.2) 		2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.3
(3)
A 		1.8
(-3)
A 		2.4
(-2.9)
A 		11
(-1)
A 		2.4
(-2.9)
A 		2.8
(-2.8)
A 		28
B 1.8
(-0.7)
A 		1.1
(-3)
A 		2.9
(3)
A 		2
(0)
A 		1.1
(-3)
A 		2
(0)
A 		2
C 2.7
(-2.3)
A 		1.5
(-3)
A 		1.8
(-2.8)
A 		2.4
(-2.5)
A 		2.2
(-2.6)
A 		11.6
(3)
A 		10
avr 11.3
(3) 		1.5
(-3) 		2.4
(-2.4) 		5.1
(-0.8) 		1.9
(-2.8) 		5.5
(-0.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.1)
A 		0.8
(-1.2)
A 		1.7
(3)
A 		0.4
(-3)
A 		1
B 1
(-1.9)
A 		4.2
(3)
A 		0.6
(-2.5)
A 		0.3
(-3)
A 		4
C 0.6
(3)
A 		0.4
(-1)
A 		0.6
(3)
A 		0.3
(-3)
A 		0
avr 0.7
(-1.4) 		1.8
(3) 		1
(-0.2) 		0.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.4
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		2.8
(-0.2)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		5
B 0.6
(-0)
A 		0.4
(-3)
A 		0.7
(1.5)
A 		0.5
(-1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0
C 1
(-2)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		0.7
(-2.5)
A 		3.9
(3)
A 		4
avr 2.3
(3) 		0.5
(-3) 		0.6
(-2.7) 		1.3
(-0.3) 		0.6
(-2.7) 		1.8
(1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5635
Sequence Type Exemplar sequence
Representative Public ID F46F5.13 NCBI
Target Description F46F5.13 /REP_DB=WormBase Gene ID /WP=CE19429 /TR=Q9TXX6 /GB=AAC78191.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061413(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061413 NCBI Caenorhabditis elegans F46F5.13 (F46F5.13) mRNA, complete cds. 11/11 None
SNAP00000029517 ENSEMBL cdna:SNAP chromosome:CEL140:II:803321:803702:1 11/11 None
GENEFINDER00000029531 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:803321:803702:1 11/11 None
F46F5.13 ENSEMBL cdna:known chromosome:CEL140:II:803321:803702:1 gene:F46F5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:803320-803702(+) 100.0 100.0
Public Domain and Genome References
Gene Title membrane protein
Ensembl F46F5.13
Entrez Gene 185866 Entrez gene
SwissProt Q9TXX6 EMBL-EBI
WormBase CE19429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78191 Hypothetical protein F46F5.13 [Caenorhabditis elegans] ref|NP_493814.1| F46F5.13 [Caenorhabditis elegans] 5.0E-59
blast AAC78191 Hypothetical protein F46F5.13 [Caenorhabditis elegans] ref|NP_493814.1| F46F5.13 [Caenorhabditis elegans] 8.0E-57
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 5.0E-25
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 9.0E-25
blast CAB16498 Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] emb|CAB05294.1| Hypothetical protein Y57G11A.2 [Caenorhabditis elegans] ref|NP_502758.1| Y57G11A.2 [Caenorhabditis elegans] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 3.9E-43
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 8.5E-45
Sequence
Target Sequence 
>C. ELEGANS:189568_AT
tatgatttccaatactgtccaaacaatcttgtgattgttggattccgtttgaagtctgag
cggcagagtaatgcggttgatgacgctggtgcactcaatattgctgtgttctgcggaact
ccaaaccaccgagaagtcaacattaaaagtggaaagtggacagctgaccaattctgcccg
tcaaactttgccgtttgcggaatccgaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGATTTCCAATACTGTCCAAACA 674 655 40 Antisense
ATCTTGTGATTGTTGGATTCCGTTT 437 31 65 Antisense
GATTCCGTTTGAAGTCTGAGCGGCA 240 427 80 Antisense
TGAGCGGCAGAGTAATGCGGTTGAT 543 567 96 Antisense
TGCGGTTGATGACGCTGGTGCACTC 666 581 111 Antisense
GCTGGTGCACTCAATATTGCTGTGT 436 295 124 Antisense
ATTGCTGTGTTCTGCGGAACTCCAA 440 5 139 Antisense
GGAACTCCAAACCACCGAGAAGTCA 705 529 154 Antisense
AGTGGACAGCTGACCAATTCTGCCC 278 59 194 Antisense
TGACCAATTCTGCCCGTCAAACTTT 29 569 204 Antisense
CTTTGCCGTTTGCGGAATCCGAACT 697 211 225 Antisense
Sequence Source Affymetrix Proprietary Database