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[189567_at] cytochrome P450

Description T10B9.1 /REP_DB=WormBase Gene ID /WP=CE01654 /TR=SW:Q27513 /GB=CAA88603.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 36      4grp_total > 14      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 29.4
(3)
A 		6.6
(-2.8)
A 		5.8
(-3)
A 		27.8
(2.6)
A 		24
B 39.9
(2.7)
A 		19.1
(-2.7)
A 		41
(3)
A 		17.8
(-3)
A 		23
C 18.7
(-2.3)
A 		32
(-0.1)
A 		14.4
(-3)
A 		50.9
(3)
A 		37
avr 29.3
(1.7) 		19.2
(-3) 		20.4
(-2.4) 		32.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 18
(1.2)
A 		3.4
(-2.5)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		10.2
(-0.8)
A 		25
(3)
A 		23
B 22
(-0)
A 		29.8
(1.1)
A 		4
(-2.7)
A 		42.3
(3)
A 		1.8
(-3)
A 		11
(-1.6)
A 		41
C 3.7
(-3)
A 		27.7
(3)
A 		4.3
(-2.9)
A 		10.6
(-1.3)
A 		6.4
(-2.3)
A 		3.9
(-3)
A 		24
avr 14.6
(1) 		20.3
(3) 		3.4
(-3) 		18.2
(2.3) 		6.1
(-2) 		13.3
(0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.7
(3)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		4.1
(-1.3)
A 		9
B 12.7
(3)
A 		4.7
(-2.4)
A 		9.5
(0.8)
A 		3.8
(-3)
A 		9
C 6.2
(-1.3)
A 		9.2
(3)
A 		5
(-3)
A 		8.6
(2.1)
A 		4
avr 9.9
(3) 		5.1
(-3) 		5.3
(-2.8) 		5.5
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.3
(0.1)
A 		1.2
(-2.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.1
(-0.2)
A 		6.1
(3)
A 		6
B 7.6
(0.9)
A 		9.9
(2.3)
A 		1
(-2.8)
A 		11.2
(3)
A 		0.7
(-3)
A 		4.1
(-1.1)
A 		11
C 1.4
(-2.8)
A 		8.4
(3)
A 		1.1
(-3)
A 		2.1
(-2.2)
A 		2.1
(-2.2)
A 		1.3
(-2.8)
A 		7
avr 4.1
(0.5) 		6.5
(3) 		0.8
(-3) 		4.6
(1) 		2
(-1.7) 		3.8
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3979
Sequence Type Exemplar sequence
Representative Public ID T10B9.1 NCBI
Target Description T10B9.1 /REP_DB=WormBase Gene ID /WP=CE01654 /TR=SW:Q27513 /GB=CAA88603.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063710 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13A4) (cyp-13A4) mRNA, complete cds. 11/11 None
SNAP00000024367 ENSEMBL cdna:SNAP chromosome:CEL140:II:9795759:9797651:-1 11/11 None
GENEFINDER00000024376 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9795759:9797651:-1 11/11 None
T10B9.1 ENSEMBL cdna:known chromosome:CEL140:II:9795759:9797651:-1 gene:T10B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9795755-9797648(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-13A4
Ensembl T10B9.1
Entrez Gene 188355 Entrez gene
SwissProt Q27513 EMBL-EBI
WormBase CE01654 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22984.1.S1_AT similar to cytochrome P450, subfamily IIIA, polypeptide 4 cfa
DROSOPHILA_2:1639944_AT dm
DROSGENOME1:153031_AT dm
DROSGENOME1:149768_S_AT dm
CHICKEN:GGA.9641.1.S1_AT similar to MGC68821 protein gga
HG-U133_PLUS_2:211441_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A:211441_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A_2:211441_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133_PLUS_2:211442_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A:211442_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A_2:211442_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133_PLUS_2:211440_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A:211440_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-FOCUS:211440_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A_2:211440_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBA:J04813_S_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBA:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBB:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBC:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBD:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HUGENEFL:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HC-G110:HUM_ALU_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HU35KSUBD:RC_AA417369_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HUGENEFL:D00408_S_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A:207773_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133_PLUS_2:207773_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U133A_2:207773_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
U133_X3P:G11225243_3P_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
U133_X3P:G11225243_3P_A_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
U133_X3P:G11225241_3P_X_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
U133_X3P:G11225241_3P_A_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U95AV2:37124_I_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
HG-U95AV2:37125_F_AT cytochrome P450, family 3, subfamily A, polypeptide 43 hs
MOUSE430_2:1424973_AT cytochrome P450, family 3, subfamily a, polypeptide 25 mm
MOE430A:1424973_AT cytochrome P450, family 3, subfamily a, polypeptide 25 mm
MOUSE430A_2:1424973_AT cytochrome P450, family 3, subfamily a, polypeptide 25 mm
MG-U74AV2:104024_AT cytochrome P450, family 3, subfamily a, polypeptide 25 mm
MU19KSUBB:TC33683_AT Cytochrome P450, family 3, subfamily a, polypeptide 25, mRNA (cDNA clone MGC:30226 IMAGE:5124151) mm
RT-U34:D38381_S_AT cytochrome P450, 3a18 rn
RG-U34A:D38381_S_AT cytochrome P450, 3a18 rn
RAE230A:1398307_AT cytochrome P450, 3a18 rn
RAT230_2:1398307_AT cytochrome P450, 3a18 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88603 Hypothetical protein T10B9.1 [Caenorhabditis elegans] ref|NP_496111.1| CYtochrome P450 family member (cyp-13A4) [Caenorhabditis elegans] sp|Q27513|C13A4_CAEEL Putative cytochrome P450 CYP13A4 0.0
blast CAA88604 Hypothetical protein T10B9.2 [Caenorhabditis elegans] ref|NP_496112.1| CYtochrome P450 family member (cyp-13A5) [Caenorhabditis elegans] sp|Q27514|C13A5_CAEEL Putative cytochrome P450 CYP13A5 0.0
blast CAA88609 Hypothetical protein T10B9.10 [Caenorhabditis elegans] ref|NP_496114.1| CYtochrome P450 family member (cyp-13A7) [Caenorhabditis elegans] sp|Q27519|C13A7_CAEEL Putative cytochrome P450 CYP13A7 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_RAT Animalia; CYP1B1; rat; CP1B_RAT; Rattus sp.; Q64678 1.0E-131
p450 CP1B_RAT Animalia; CYP1B1; rat; CP1B_RAT; Rattus sp.; Q64678 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.0E-94
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496111.1 2 5-27,215-234
T10B9.1 2 5-27,215-234
SNAP00000024367 2 5-27,213-230
GENEFINDER00000024376 2 5-27,215-234
Sequence
Target Sequence 
>C. ELEGANS:189567_AT
attggtcaattgtttgttttcttgttagctggatatgatacaactgccctttctctgtca
tattcttcatatctcctggcaacacatccagagattcagaagaaattacaagaagaagtg
gatagagaatgcccagaccctgaagtcacttttgatcagatatcaaaactgaagtacatg
gaatgtgtggtaaaagaagctctacgaatgtaccctttagcatccttagttcacaaccga
aagtgcatgaagaaaaccaatgttcttggagttgaaatagatgaaggaacaaatgtgcaa
gtggatacatggacacttcattatgatccaaaagtttggggagatgatgcaagcgagttt
aaaccagagagatgggaaaccggggacgaactattttatgcaaaaggaggatatcttcca
ttcggtatgggaccaagaatttgtattggaatgcgattagctatgatggaagaaaaattg
ttattgacccacatcctgaaaaagtacacatttgatacttccacagaaactgaaattcca
ttaaaattggtcggatccgccacaattgcaccaagaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTCAATTGTTTGTTTTCTTGT 561 3 961 Antisense
AGCTCTACGAATGTACCCTTTAGCA 197 77 1158 Antisense
ACGAATGTACCCTTTAGCATCCTTA 667 91 1164 Antisense
ACCCTTTAGCATCCTTAGTTCACAA 371 89 1172 Antisense
AGCATCCTTAGTTCACAACCGAAAG 561 75 1179 Antisense
ATGATGCAAGCGAGTTTAAACCAGA 34 43 1304 Antisense
ATTGGAATGCGATTAGCTATGATGG 376 3 1405 Antisense
AAAATTGTTATTGACCCACATCCTG 601 129 1434 Antisense
GTACACATTTGATACTTCCACAGAA 200 461 1464 Antisense
CATTTGATACTTCCACAGAAACTGA 700 213 1469 Antisense
ATCCGCCACAATTGCACCAAGAAAT 159 39 1515 Antisense
Sequence Source Affymetrix Proprietary Database