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[189564_s_at] carboxylesterase

Description B0238.1 /REP_DB=WormBase Gene ID /WP=CE07691 /TR=O16497 /GB=AAB65983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 85      4grp_total > 03      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 863
1 2 3 4 range
A 199.4
(-2.1)
P 		131
(-2.6)
P 		76.4
(-3)
P 		939.5
(3)
P 		863
B 170.6
(-2.5)
P 		113.4
(-2.9)
P 		100.4
(-3)
P 		883.1
(3)
P 		783
C 187
(-2.3)
P 		138.4
(-2.7)
P 		100.3
(-3)
P 		815.3
(3)
P 		715
avr 185.7
(-2.3) 		127.6
(-2.7) 		92.4
(-3) 		879.3
(3) 		787

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 155.2
(-3)
P 		176.1
(-2.4)
P 		276.9
(0.4)
P 		368.7
(3)
P 		267.8
(0.2)
P 		324.5
(1.8)
P 		214
B 167.9
(-3)
P 		189.5
(-2.1)
P 		187.6
(-2.2)
P 		313.6
(3)
P 		267
(1.1)
P 		285.7
(1.9)
P 		146
C 216.3
(-1.7)
P 		179.6
(-3)
P 		210.8
(-1.9)
P 		344.5
(3)
P 		276.7
(0.5)
P 		280.8
(0.7)
P 		165
avr 179.8
(-3) 		181.7
(-2.9) 		225.1
(-1.3) 		342.3
(3) 		270.5
(0.3) 		297
(1.3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 72.6
(-0.3)
P 		28.4
(-2.6)
P 		20
(-3)
P 		137.5
(3)
P 		118
B 54.4
(-1.9)
P 		28
(-2.8)
P 		23.3
(-3)
P 		188.2
(3)
P 		165
C 61.9
(-1.4)
P 		39.8
(-2.7)
P 		35
(-3)
P 		137.5
(3)
P 		103
avr 63
(-1.3) 		32.1
(-2.7) 		26.1
(-3) 		154.4
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 28.6
(-3)
P 		62.6
(0.1)
P 		60.3
(-0.1)
P 		93.5
(3)
P 		80.8
(1.8)
P 		79
(1.7)
P 		65
B 58.4
(-1.8)
P 		63.1
(-1.3)
P 		45.5
(-3)
P 		83.1
(0.6)
P 		108.5
(3)
P 		106.5
(2.8)
P 		63
C 80.2
(1)
P 		54.8
(-2.8)
P 		53.6
(-3)
P 		69.3
(-0.7)
P 		89.5
(2.3)
P 		94
(3)
P 		40
avr 55.7
(-2.6) 		60.2
(-1.9) 		53.1
(-3) 		82
(1.3) 		92.9
(3) 		93.2
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189564_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12431
Sequence Type Exemplar sequence
Representative Public ID B0238.1 NCBI
Target Description B0238.1 /REP_DB=WormBase Gene ID /WP=CE07691 /TR=O16497 /GB=AAB65983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=carboxylesterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071999 NCBI Caenorhabditis elegans B0238.1 (carboxylesterase) mRNA, complete cds. 11/11 None
SNAP00000038867 ENSEMBL cdna:SNAP chromosome:CEL140:V:5240669:5242873:-1 11/11 None
GENEFINDER00000038879 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5240669:5242873:-1 11/11 None
B0238.1 ENSEMBL cdna:known chromosome:CEL140:V:5240611:5242948:-1 gene:B0238.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5240668-5242873(-) 100.0 100.0
Public Domain and Genome References
Gene Title carboxylesterase
Ensembl B0238.1
Entrez Gene 178912 Entrez gene
SwissProt O16497 EMBL-EBI
WormBase CE07691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65983 Hypothetical protein B0238.1 [Caenorhabditis elegans] ref|NP_504400.1| B0238.1 [Caenorhabditis elegans] 0.0
blast AAK68262 Hypothetical protein C52A10.2 [Caenorhabditis elegans] ref|NP_504398.1| C52A10.2 [Caenorhabditis elegans] 0.0
blast H89045 protein B0238.13 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189564_S_AT
tttgaagaattttatcctggccagaaaagccctcaagaagtgctaacagcagctttgggt
cctgaagttgtgaggaatagggaagaagttgtcaagaaagctgtggaggcgtatttagaa
aatattgaagacaaaagtggagagaaaattggcaagaaattagttgagatattcggagac
tactatttcagtgttggagtatttgatactgttcgatcacttgccaagtatggaaataat
gtttatctgtcctctttcaactacttcaacccggaaacccctatcatgttcggcgaaaat
cggccgttcaatgcagcttcccatggttgtgatatcagatatattttgggtgacggtatt
ggagagttttcgaaagaagatagaaaggttatggatatgatgggaacttatctcacaaac
tttgcaaaatatggcaatccaaatggaaaaggagtatcgattccatgggaaaagtacagt
cttgacaatccaggaagatatttcaagattgattatccgaaatgtgagatggccgataat
ttcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAAGAATTTTATCCTGGCCAGA 595 667 1024 Antisense
ATCCTGGCCAGAAAAGCCCTCAAGA 69 39 1037 Antisense
GAAGTGCTAACAGCAGCTTTGGGTC 314 335 1060 Antisense
GAAAGCTGTGGAGGCGTATTTAGAA 651 359 1119 Antisense
ATAATGTTTATCTGTCCTCTTTCAA 612 25 1259 Antisense
AACCCCTATCATGTTCGGCGAAAAT 223 59 1299 Antisense
GGCGAAAATCGGCCGTTCAATGCAG 55 539 1315 Antisense
TCAATGCAGCTTCCCATGGTTGTGA 576 631 1331 Antisense
GGGTGACGGTATTGGAGAGTTTTCG 424 489 1371 Antisense
GGGAACTTATCTCACAAACTTTGCA 648 489 1425 Antisense
TGTGAGATGGCCGATAATTTCTTGG 67 557 1546 Antisense
Sequence Source Affymetrix Proprietary Database